LOCUS       XM_039109071             884 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus gastrokine 3 (Gkn3), mRNA.
ACCESSION   XM_039109071
VERSION     XM_039109071.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109071.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..884
                     /gene="Gkn3"
                     /note="gastrokine 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 90%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:685128"
                     /db_xref="RGD:1597754"
     CDS             1..573
                     /gene="Gkn3"
                     /codon_start=1
                     /product="gastrokine-3"
                     /protein_id="XP_038964999.1"
                     /db_xref="GeneID:685128"
                     /db_xref="RGD:1597754"
                     /translation="MHITVDNRFFLDQIAPSILVTVFLVPTLALMNTSDSHLLDGSVG
                     TQTIHVDTFRGMVSIQDDNVLSEWNGIVDYKNALLAVKLFSKMACVLVKMDPAAFPSL
                     NDITQAVGKQASGHYPPTRGLTYTVLPNRIKNLAQYGVPVKDLCRAVPTYFARQQKEG
                     TAGAMDPDSCSELQLLSFMGLSICGEIPGL"
ORIGIN      
        1 atgcacataa cagtggataa tcgtttcttc ttagaccaga ttgcaccttc cattcttgtg
       61 accgtctttc tagttccaac cctggccctg atgaacacta gtgacagtca tcttctggat
      121 ggctctgtgg ggacccagac catccatgtt gataccttcc gaggtatggt cagcatccag
      181 gatgacaacg ttttgagtga atggaatggc atcgtggact acaagaacgc cctcctggca
      241 gttaagctct ttagtaagat ggcctgtgtc ctggtcaaga tggacccagc agccttccca
      301 agtttgaacg acattaccca ggcggtgggc aagcaggctt ccggtcacta cccacccacg
      361 cgcggactga cctacacagt tttgcccaat cgaatcaaaa acttggccca atacggagtg
      421 ccagtaaaag acctatgcag agcggtcccc acctactttg ctcggcagca aaaggaaggt
      481 accgccgggg caatggaccc agactcctgt tctgagctcc agctgctatc cttcatgggg
      541 ctgtccatct gtggggagat ccctgggctc tgaacctggt ccagcctctc tgcctgtggg
      601 aagtgtccca tacaggccct gccctccaca tcttggcatc ccatgccccc ctgtaatctg
      661 ggattggggg tggggggata ggtgcatttt ctaccttgta cgaagaaata ataaagttcc
      721 agtgtctgtg gtctagcaga tggattctct tatcctcttg ggttccccca tcctctgcag
      781 cccccctcat cctccacatc atccctcatc ctctacatca tccctcatcc tccacatcat
      841 cccccatcct ctgcagcccc cctcatcctc cacatcatcc ctca
//
