LOCUS       NM_001039686             720 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus gastrokine 2 (Gkn2), mRNA.
ACCESSION   NM_001039686 XM_216206
VERSION     NM_001039686.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Antas,V.I., Brigden,K.W., Prudence,A.J. and Fraser,S.T.
  TITLE     Gastrokine-2 is transiently expressed in the endodermal and
            endothelial cells of the maturing mouse yolk sac
  JOURNAL   Gene Expr Patterns 16 (2), 69-74 (2014)
   PUBMED   25290738
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Archambaud,C., Nahori,M.A., Soubigou,G., Becavin,C., Laval,L.,
            Lechat,P., Smokvina,T., Langella,P., Lecuit,M. and Cossart,P.
  TITLE     Impact of lactobacilli on orally acquired listeriosis
  JOURNAL   Proc Natl Acad Sci U S A 109 (41), 16684-16689 (2012)
   PUBMED   23012479
REFERENCE   3  (bases 1 to 720)
  AUTHORS   Otto,W.R., Patel,K., McKinnell,I., Evans,M.D., Lee,C.Y., Frith,D.,
            Hanrahan,S., Blight,K., Blin,N., Kayademir,T., Poulsom,R.,
            Jeffery,R., Hunt,T., Wright,N.A., McGregor,F. and Oien,K.A.
  TITLE     Identification of blottin: a novel gastric trefoil factor family-2
            binding protein
  JOURNAL   Proteomics 6 (15), 4235-4245 (2006)
   PUBMED   16888721
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001039686.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY943907.1, SRR26643294.18822.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN14984043, SAMN16093044
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-42                JAXUCZ010000004.1  121375594-121375635
            43-96               JAXUCZ010000004.1  121377448-121377501
            97-234              JAXUCZ010000004.1  121377886-121378023
            235-345             JAXUCZ010000004.1  121379543-121379653
            346-502             JAXUCZ010000004.1  121380287-121380443
            503-720             JAXUCZ010000004.1  121381461-121381678
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..720
                     /gene="Gkn2"
                     /gene_synonym="RGD1311934"
                     /note="gastrokine 2"
                     /db_xref="GeneID:297419"
                     /db_xref="RGD:1311934"
     exon            1..42
                     /gene="Gkn2"
                     /gene_synonym="RGD1311934"
                     /inference="alignment:Splign:2.1.0"
     CDS             31..585
                     /gene="Gkn2"
                     /gene_synonym="RGD1311934"
                     /note="blottin"
                     /codon_start=1
                     /product="gastrokine-2 precursor"
                     /protein_id="NP_001034775.1"
                     /db_xref="GeneID:297419"
                     /db_xref="RGD:1311934"
                     /translation="MKSLVAFLVVLSILRIQSQAKEVFNIFVPGNNGGNVQETVTIDN
                     QENTATINIHSGSCSSTTIFDYKHGYIASRVLSRRACYIIKMDHKAIPALDKLQRFLY
                     EKQTMNAMASTEYTWVKYNPLKSLITKVDWFLFGSPIEQLCKHIPLYEGEVATKPREV
                     GTGGCAKVGILGILGISICGGIHL"
     exon            43..96
                     /gene="Gkn2"
                     /gene_synonym="RGD1311934"
                     /inference="alignment:Splign:2.1.0"
     exon            97..234
                     /gene="Gkn2"
                     /gene_synonym="RGD1311934"
                     /inference="alignment:Splign:2.1.0"
     exon            235..345
                     /gene="Gkn2"
                     /gene_synonym="RGD1311934"
                     /inference="alignment:Splign:2.1.0"
     exon            346..502
                     /gene="Gkn2"
                     /gene_synonym="RGD1311934"
                     /inference="alignment:Splign:2.1.0"
     exon            503..720
                     /gene="Gkn2"
                     /gene_synonym="RGD1311934"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcctgctcca gctccctctc ttcaggcaaa atgaaatccc tggtggcttt tctggtggtg
       61 ctgtccatcc tcagaataca atcgcaggct aaggaggttt ttaacatctt cgtcccaggc
      121 aacaatggcg gcaatgtcca ggagaccgtg accattgaca accaggagaa cacagccacc
      181 atcaacatcc actcgggctc atgctcttcc accaccattt ttgactataa gcatggttac
      241 attgcgtccc gggtgctctc ccggagagcc tgctacatca tcaagatgga ccacaaagcc
      301 atccctgctc tggacaaact ccaacggttc ctctatgaga agcagacaat gaatgccatg
      361 gcctccacgg agtatacctg ggtcaagtac aaccccctaa agtctctgat cacaaaggtg
      421 gactggttcc tgtttggctc cccgattgag cagctgtgca agcacatccc cctgtatgag
      481 ggggaggtgg ccacgaagcc aagagaggtg ggcactggag gctgtgcaaa ggtggggatc
      541 ctgggtatcc tggggatctc tatctgcgga gggattcacc tttaagatgg cccatcagtt
      601 gacttcgtct tttcaaagaa acaaaccttt ggttgccact cagaagcaaa actaaattct
      661 tcccaacatt ccatgtactt atgagatcca gcaataacac agaaatgata tatttacaga
//
