LOCUS       XM_017601372            1724 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus GIPC PDZ domain containing family,
            member 1 (Gipc1), transcript variant X2, mRNA.
ACCESSION   XM_017601372
VERSION     XM_017601372.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017601372.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017601372.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1724
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1724
                     /gene="Gipc1"
                     /gene_synonym="Gipc; Rgs19; Rgs19ip1"
                     /note="GIPC PDZ domain containing family, member 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 16 ESTs, 28 long SRA reads, 17
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 89 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:83823"
                     /db_xref="RGD:68338"
     CDS             205..1206
                     /gene="Gipc1"
                     /gene_synonym="Gipc; Rgs19; Rgs19ip1"
                     /codon_start=1
                     /product="PDZ domain-containing protein GIPC1 isoform X1"
                     /protein_id="XP_017456861.1"
                     /db_xref="GeneID:83823"
                     /db_xref="RGD:68338"
                     /translation="MPLGLGRRKKAPPLVENEEAEPSRSGLGVGEPGPLGGSGAGESQ
                     MGLPPPPASLRPRLVFHTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPAAEVMFCTL
                     NTHKVDMDKLLGGQIGLEDFIFAHVKGQRKEVEVFKSEDALGLTITDNGAGYAFIKRI
                     KEGSVIDHIQLISVGDMIEAINGQSLLGCRHYEVARLLKELPRGRTFTLKLTEPRKAF
                     DMISQRSSGGHPGSGPQLGTGRGTLRLRSRGPATVEDLPSAFEEKAIEKVDDLLESYM
                     GIRDTELAATMVELGKDKRNPDELAEALDERLGDFAFPDEFVFDVWGAIGDAKVGRY"
ORIGIN      
        1 cgggcggagt ttcgagagga ccgagcaggg cgcacggggt ggcggcggcg cagacccaaa
       61 cttgggtttt gcacagagca ttaatgactg caactgatag aaaatgaaaa gacactgtgt
      121 ctggtggttt ccatctgctc caacactgca agatgaacag aggtagagtt ggtctcccgg
      181 ccaagtcccc acttctggct gctcatgcca ctgggactgg ggcgaaggaa aaaagcacca
      241 cctctggtgg aaaatgagga ggcggagcca agccggagtg ggctgggcgt cggggagccc
      301 gggcccctgg gtggaagtgg agcaggggaa tcccagatgg gtttgccccc acctcctgct
      361 tccctccggc ctcgcctcgt gttccatacc cagctggccc acggcagccc cacgggccgc
      421 atcgagggct tcactaatgt caaggagctg tacggcaaga tcgctgaggc cttccgacta
      481 ccggctgctg aggtgatgtt ctgtaccctc aacacccata aagtggatat ggacaagctg
      541 ctggggggcc agatcgggct ggaggacttc atctttgccc atgtcaaggg gcagcgcaaa
      601 gaggtggaag tattcaagtc tgaggatgct ctggggctca ccatcaccga caacggggcc
      661 ggctatgcct tcattaagcg catcaaggaa ggcagtgtga ttgaccacat ccagctcatc
      721 agcgtgggtg acatgattga agccatcaac gggcagagcc tgctgggctg tcggcattat
      781 gaggttgcca ggctcctcaa agagctgccc cgaggccgca ccttcaccct caaactcacc
      841 gaacctcgga aggcgtttga tatgatcagc cagcgttcat caggtggtca ccctggctca
      901 ggcccacaac tgggcactgg ccgagggacc ctccggctcc gatcccgggg ccctgccaca
      961 gtggaggatc tgccgtcagc ttttgaggaa aaggccattg aaaaggtgga tgacttgcta
     1021 gagagctaca tggggatcag agacacagag ctggctgcca cgatggtgga gctggggaaa
     1081 gacaaaagga acccagacga actggcagaa gctctggatg aacggctcgg tgacttcgca
     1141 ttcccagatg aattcgtctt tgatgtctgg ggagccatcg gggatgccaa ggttggccgc
     1201 tactaagact gggactgaac ctggaccttg agataacctg gctttgccca gctggggttt
     1261 ccagaaacca cagccaagac ctgggctgac agcttaggct gtaactccgc agcctgggga
     1321 tggcacaggc tgcaagtgcc ctgtggtcca ggccccgctc caatcagtac cgccacggtg
     1381 cccagcctgg ttggggtccc cggccaaccc ctgccgggtt ccccacctac ctcaatagag
     1441 taagcgcatg gggagggacc aacacactag gcagccagcc acctctatcc ccaacacttc
     1501 ccactatcag ctggcaactg ccccttctgt ccccctggcc tcagctctct tcggggtcat
     1561 gacctcccta ctttactttt tttgctttgt ttttttcaag acaaagtcac tatgtagctc
     1621 tggctgtcct ggaactcctt ctgtaaacca ggctggcctt gaactcacag agatccacct
     1681 gcatctgcat tcacagtgct gggaataaag gtgtgcatca ccac
//
