LOCUS       NM_001400838            1569 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus glycosylated integral membrane protein 1 (Ginm1),
            mRNA.
ACCESSION   NM_001400838 XM_006227626
VERSION     NM_001400838.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Prunotto,M., Farina,A., Lane,L., Pernin,A., Schifferli,J.,
            Hochstrasser,D.F., Lescuyer,P. and Moll,S.
  TITLE     Proteomic analysis of podocyte exosome-enriched fraction from
            normal human urine
  JOURNAL   J Proteomics 82, 193-229 (2013)
   PUBMED   23376485
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jan 27, 2022 this sequence version replaced XM_006227626.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.71561.1,
                                           SRR22582419.718428.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760386,
                                           SAMN11044071 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-145               JAXUCZ010000001.1  4082473-4082617     c
            146-205             JAXUCZ010000001.1  4077771-4077830     c
            206-302             JAXUCZ010000001.1  4076216-4076312     c
            303-454             JAXUCZ010000001.1  4073764-4073915     c
            455-611             JAXUCZ010000001.1  4072791-4072947     c
            612-745             JAXUCZ010000001.1  4072050-4072183     c
            746-909             JAXUCZ010000001.1  4069198-4069361     c
            910-1569            JAXUCZ010000001.1  4066766-4067425     c
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p13"
     gene            1..1569
                     /gene="Ginm1"
                     /gene_synonym="RGD1309759"
                     /note="glycosylated integral membrane protein 1"
                     /db_xref="GeneID:361448"
                     /db_xref="RGD:1309759"
     exon            1..145
                     /gene="Ginm1"
                     /gene_synonym="RGD1309759"
                     /inference="alignment:Splign:2.1.0"
     CDS             32..1021
                     /gene="Ginm1"
                     /gene_synonym="RGD1309759"
                     /note="glycoprotein integral membrane protein 1;
                     glycoprotein integral membrane 1"
                     /codon_start=1
                     /product="glycoprotein integral membrane protein 1
                     precursor"
                     /protein_id="NP_001387767.1"
                     /db_xref="GeneID:361448"
                     /db_xref="RGD:1309759"
                     /translation="MEGALSAPLPVRLLLFVALPAAGWLTTNAPRPLSTVPQDGIRIN
                     VTTQKDNGEVSKEQVVLNITYESGQVYVNDLPVNSGVTRISCQTSIVKSENLENLEEK
                     EYFGIVTVRILLRERPVTYSTSSQLIVIQEEVVELDGRQAQQKNVTEINILVKNQRVL
                     RRSNFFLPLEESMLYSISQDSDILFTPPDFSKKVGTVGSLQTTSHYLVGDLGTTVDGN
                     ALPGKLPETPLRAEPPSSYKVMCQWMEKLRKALCGFWSGVFPVLFMFLNVMVVGVLGA
                     AGVIALLKLLFPVRENKGILQVDKMNGISVVPIILYPDGSEKTAEKLTDKTDI"
     exon            146..205
                     /gene="Ginm1"
                     /gene_synonym="RGD1309759"
                     /inference="alignment:Splign:2.1.0"
     exon            206..302
                     /gene="Ginm1"
                     /gene_synonym="RGD1309759"
                     /inference="alignment:Splign:2.1.0"
     exon            303..454
                     /gene="Ginm1"
                     /gene_synonym="RGD1309759"
                     /inference="alignment:Splign:2.1.0"
     exon            455..611
                     /gene="Ginm1"
                     /gene_synonym="RGD1309759"
                     /inference="alignment:Splign:2.1.0"
     exon            612..745
                     /gene="Ginm1"
                     /gene_synonym="RGD1309759"
                     /inference="alignment:Splign:2.1.0"
     exon            746..909
                     /gene="Ginm1"
                     /gene_synonym="RGD1309759"
                     /inference="alignment:Splign:2.1.0"
     exon            910..1569
                     /gene="Ginm1"
                     /gene_synonym="RGD1309759"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcccgccgc ctggcgccgg tgttgtccaa gatggagggc gccctttcgg cgccgctgcc
       61 cgtccggctg ttgctgtttg tggcgctgcc agccgcgggg tggctgacca ccaacgcgcc
      121 caggcctctg tccacagtcc cgcaggatgg catcagaatt aatgtaacta cccagaaaga
      181 caatggggaa gtatctaaag agcaggttgt tcttaacata acctatgaga gtggacaggt
      241 gtatgtgaat gacttacctg taaatagtgg tgtaacccga ataagctgtc agacttcgat
      301 agtgaagagt gaaaatctgg aaaatttgga ggagaaagaa tattttggaa tagtcactgt
      361 aaggatctta cttcgtgaga ggcctgtgac atatagtacc agttcacagc taattgtcat
      421 tcaggaggag gttgtggagc tcgatggaag acaagctcaa caaaagaatg ttactgaaat
      481 caacatttta gttaagaacc agagagtact cagacgttca aactttttcc ttcctttgga
      541 agaaagcatg ctttattcta tttcccaaga cagtgacatt ttattcacgc ctcccgattt
      601 ttccaaaaaa gtaggaactg ttggctcact gcagaccacc agccactacc tcgtggggga
      661 cttgggaacc acggtggatg gaaatgcttt acctggcaag ttgcctgaga cgcctctcag
      721 agcagagccg ccatcttcat acaaggtaat gtgccagtgg atggagaagc tcaggaaggc
      781 actctgtggg ttctggagcg gcgtgttccc agtgttgttc atgtttctga acgtcatggt
      841 ggttggagtt ctgggagcag caggagtcat tgcgctgtta aagttgcttt tccctgtgcg
      901 tgagaacaaa ggaattcttc aggtggataa aatgaatggg atctctgtgg tacctatcat
      961 cttataccca gacggctctg agaaaacagc agaaaaactt acagataaaa cggatattta
     1021 aaaccccatc tccaatcatg gactctactg tctatcatcc ccagactcgc catttgaata
     1081 ccattttatt taaattatta atcaatttat tcataaaaat tgccaaattc ccaagacctt
     1141 tacaggtggc ctttctagtg cccggctaca gctcacctca tcaagcacgg gctggctgtt
     1201 ctgaagaaga attactaagg aaagtttaag tggaaagaag ataactgaga aataccaagc
     1261 tgaaaggaga cgtaagacaa agcgactgcc aagaactccc aggtgccttt gctgcagaaa
     1321 ttgtaactga ttactattgt aagattttat aagaagcact ttatgaaatt ctaatttaaa
     1381 agctggagaa tttaacagct attttgttta ctcagtacaa tgtgccttta tatcacatac
     1441 atgactcagt ataaaatcac tgaagtgtgt catgatttgt gtctgtacca gaactcttta
     1501 ccttgaatgc accaggattt ataatagtga catggtctca ctctaaaata aacttttttt
     1561 ttttttaaa
//
