LOCUS       NM_001025012            1866 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus gypsy retrotransposon integrase 1 (Gin1), mRNA.
ACCESSION   NM_001025012
VERSION     NM_001025012.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1866)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC082058.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082058.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q36"
     gene            1..1866
                     /gene="Gin1"
                     /gene_synonym="RGD1307449"
                     /note="gypsy retrotransposon integrase 1"
                     /db_xref="GeneID:316687"
                     /db_xref="RGD:1307449"
     exon            1..19
                     /gene="Gin1"
                     /gene_synonym="RGD1307449"
                     /inference="alignment:Splign:2.1.0"
     exon            20..182
                     /gene="Gin1"
                     /gene_synonym="RGD1307449"
                     /inference="alignment:Splign:2.1.0"
     exon            183..328
                     /gene="Gin1"
                     /gene_synonym="RGD1307449"
                     /inference="alignment:Splign:2.1.0"
     CDS             190..1746
                     /gene="Gin1"
                     /gene_synonym="RGD1307449"
                     /note="GIN-1"
                     /codon_start=1
                     /product="gypsy retrotransposon integrase-like protein 1"
                     /protein_id="NP_001020183.1"
                     /db_xref="GeneID:316687"
                     /db_xref="RGD:1307449"
                     /translation="MVRSGKNGDLHLKQIAYYKRTGEYHPTTLSSERSGIRRAAKKFV
                     FKEKKLFYVGKDRKQNRLVVVSEEEKKKVLRECHENGPGVHHGISRTLTLVESSYYWT
                     SVTNDVKQWVYACQHCQVAKSTVIVAPQQHLSVVGNPWSVVTVDLMGPFHTSSRSHVY
                     AMIMTDLFTKWVMILPLCDVSASEISKAIINIFFLYGPPQKIIMDQRDEFIDQINVEL
                     YRLFGAKEIVISQASGSVNPSESTPSTVKTFLSKHCAEHPETWDEELPALSFAFNVTR
                     VEPTKNSPYFQMFNRNPCLLECPHEGGGEGTSVFARIVAAVREADGVVENQTPAAGQM
                     ESSTSEELSKSKVAKKKPKQLNPFHLKVGHEVLRQRKNWWKDGRFQSEWVGPCVIDYI
                     TDSGCAVLRDNTGTRLKRPIKMSHLRPYVREPSEQDSLYLLQGSIVADHDYIGLPEIP
                     VGTYQANILVEDATIGIVDNELLISSKDHELLEYRNSKISALVEDHSSLEKQTFSLLD
                     SSNQVLEYLS"
     exon            329..522
                     /gene="Gin1"
                     /gene_synonym="RGD1307449"
                     /inference="alignment:Splign:2.1.0"
     exon            523..828
                     /gene="Gin1"
                     /gene_synonym="RGD1307449"
                     /inference="alignment:Splign:2.1.0"
     exon            829..1188
                     /gene="Gin1"
                     /gene_synonym="RGD1307449"
                     /inference="alignment:Splign:2.1.0"
     exon            1189..1471
                     /gene="Gin1"
                     /gene_synonym="RGD1307449"
                     /inference="alignment:Splign:2.1.0"
     exon            1472..1842
                     /gene="Gin1"
                     /gene_synonym="RGD1307449"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgcatttagg accacttcga agcagcagtt gatgaactac gtaaaacaat aagtcattat
       61 aaagtccata cactgggagg ctgaggcagg aggatcacca tgagtgtgaa gccagcccca
      121 tctacctagt tccaggacag ctttggctac agataccctg aaaagggaca gggggaaaaa
      181 aaggtcacga tggtccgtag tgggaaaaac ggtgaccttc atcttaaaca gatcgcgtac
      241 tataagcgca caggcgagta ccacccgacc acactgtcga gtgagagaag cggcatcaga
      301 agggcggcta agaaatttgt cttcaaagaa aaaaagctgt tttatgttgg aaaagacaga
      361 aaacaaaatc gtttggtagt tgtttcggaa gaggaaaaaa agaaagtgtt gagagagtgc
      421 catgaaaatg gccctggtgt ccatcacggc atctccagaa ccctcactct agtggagtcc
      481 agctactatt ggacatccgt gaccaatgat gtcaagcagt gggtatatgc ttgtcagcat
      541 tgccaagtag cgaaaagcac agttatcgta gcaccacagc agcacctttc cgtggtggga
      601 aacccgtgga gtgtagttac tgttgatctg atgggacctt tccatacaag cagcagaagt
      661 catgtgtatg ctatgatcat gacagacttg ttcacaaaat gggttatgat tttgccttta
      721 tgtgatgttt cagcatcaga aatttctaaa gctattatca atatattttt cctatatgga
      781 cctcctcaga aaataataat ggaccaaaga gatgaattca ttgatcagat caatgtagaa
      841 ctgtatagat tatttggtgc aaaggagatt gtaatttctc aagcgtctgg aagtgtgaat
      901 ccatctgaaa gcacgcccag cacggtgaaa acattcctct ccaaacactg cgccgagcac
      961 cccgagacct gggacgagga gctgccagct ctctcctttg ccttcaacgt gacccgcgtg
     1021 gagcctacta aaaactcgcc gtatttccaa atgttcaacc ggaacccttg cttgctcgag
     1081 tgtcctcatg aagggggagg cgaaggcaca agcgtgttcg ccagaatcgt ggctgcggtt
     1141 agagaggctg atggcgtggt ggagaaccag acaccagcag caggccagat ggagagcagc
     1201 acttcagagg agctgagtaa aagcaaagtt gctaagaaga aaccaaagca gctaaacccc
     1261 ttccacttga aagtgggtca cgaggtgtta aggcagagga agaactggtg gaaggatggc
     1321 cgcttccaat ctgagtgggt tggtccttgt gtcatcgact acattacaga cagcggatgc
     1381 gctgtcctca gagacaacac tggaaccaga ctcaaacgac ctatcaaaat gtcccacctc
     1441 aggccttacg tgagagagcc aagtgagcag gacagtcttt atctcctgca aggttccata
     1501 gtggcggatc acgactacat tggattacct gaaatcccag ttggaacata ccaggctaat
     1561 attctggtgg aagatgcaac gatcgggatt gttgataatg aattattgat atcaagcaag
     1621 gatcatgaac tcttagaata tagaaattca aaaatctctg cgttggtaga agaccacagt
     1681 tctcttgaga aacagacttt cagtctactg gattcttcaa atcaagttct tgagtacctc
     1741 agttagtgaa taccagaatg aacttcgaat gcttgcatag aatgtacata tttctagttt
     1801 gtaagtattt tatctattaa aataggttgt atagaagaga aaaaaaaaaa aaaaaaaaaa
     1861 aaaaaa
//
