LOCUS       NM_001398917            3947 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus GID complex subunit 4 (Gid4), mRNA.
ACCESSION   NM_001398917 XM_003750840
VERSION     NM_001398917.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3947)
  AUTHORS   Lampert,F., Stafa,D., Goga,A., Soste,M.V., Gilberto,S., Olieric,N.,
            Picotti,P., Stoffel,M. and Peter,M.
  TITLE     The multi-subunit GID/CTLH E3 ubiquitin ligase promotes cell
            proliferation and targets the transcription factor Hbp1 for
            degradation
  JOURNAL   Elife 7, e35528 (2018)
   PUBMED   29911972
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 28, 2021 this sequence version replaced XM_003750840.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643286.30531.1,
                                           SRR26643292.40913.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-270               JAXUCZ010000010.1  45721055-45721324
            271-330             JAXUCZ010000010.1  45727998-45728057
            331-438             JAXUCZ010000010.1  45735505-45735612
            439-540             JAXUCZ010000010.1  45739351-45739452
            541-671             JAXUCZ010000010.1  45741347-45741477
            672-3947            JAXUCZ010000010.1  45743857-45747132
FEATURES             Location/Qualifiers
     source          1..3947
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..3947
                     /gene="Gid4"
                     /note="GID complex subunit 4"
                     /db_xref="GeneID:687192"
                     /db_xref="RGD:1588894"
     exon            1..270
                     /gene="Gid4"
                     /inference="alignment:Splign:2.1.0"
     CDS             82..735
                     /gene="Gid4"
                     /codon_start=1
                     /product="glucose-induced degradation protein 4 homolog"
                     /protein_id="NP_001385846.1"
                     /db_xref="GeneID:687192"
                     /db_xref="RGD:1588894"
                     /translation="MPVRTECPPPAGASATSAASLIPPPPINTQQPGVATSLLYSGSK
                     FRGHQKSKGNSYDVEVVLQHVDTGNSYLCGYLKIKGLTEEYPTLTTFFEGEIISKKHP
                     FLTRKWDADEDVDRKHWGKFLAFYQYAKSFNSDDFDYEELKNGDYVFMRWKEQFLVPD
                     HTIKDISGASFAGFYYICFQKSAASIEGYYYHRSSEWYQSLNLTHVPEHSAPIYEFR"
     exon            271..330
                     /gene="Gid4"
                     /inference="alignment:Splign:2.1.0"
     exon            331..438
                     /gene="Gid4"
                     /inference="alignment:Splign:2.1.0"
     exon            439..540
                     /gene="Gid4"
                     /inference="alignment:Splign:2.1.0"
     exon            541..671
                     /gene="Gid4"
                     /inference="alignment:Splign:2.1.0"
     exon            672..3947
                     /gene="Gid4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccctccccg cagcttcggc tcccgcgcgg cggcggcggt tccttccccc tcccccagcc
       61 ctggctccgg gggaccccgc gatgccggtc cgcaccgagt gtcccccgcc ggcgggtgcc
      121 tcagccacat ccgcggcttc actcatcccg ccgccgccca tcaacaccca gcagcccggc
      181 gtggccacca gcttgctcta cagcggctcc aagttccgtg gccaccagaa gagcaagggg
      241 aactcgtacg acgtagaggt ggtgctgcag cacgtggaca ctgggaactc ttacctttgt
      301 gggtacttga agattaaagg ccttacagag gaatatccaa cccttacaac cttctttgaa
      361 ggagaaataa taagcaaaaa acaccctttc ttaactcgga agtgggacgc agatgaagac
      421 gtggatcgga aacactgggg caagtttctg gctttttatc agtatgcaaa atcatttaat
      481 tcagatgact ttgattatga agaactgaaa aatggggatt atgtcttcat gaggtggaag
      541 gagcagttcc tagtcccgga ccacacaatc aaagacatca gcggtgcttc ctttgctggc
      601 ttctattaca tctgctttca gaagtcagca gcctccatag agggctacta ctaccatcgg
      661 agttcagaat ggtatcagtc cctcaacctg acccatgttc ctgaacacag tgcacccatc
      721 tatgagttcc ggtgacagtg gttcagaaca gtggccaaat aaaactgaac ttggcaacaa
      781 agagctttgc caaggaaatt atgtacctgc cagaaccagg agaggtgtgt tcctgttcct
      841 tcagagcaga cttcatcaga aagcatgaat gttaacctac aggatccaag gagcatggcc
      901 aacctgcagg caggcagagg gagttgtcca cctcccaccc tccttcctct cagtggcatt
      961 gtggtcacca tctgtttctg aacaacctta aatgcacttt ccttcctgca cagctaactt
     1021 ctgcatcact gaaatgcaat ctttcctcgg cctgctctag ccaagtggga ggtcagctgc
     1081 tgggtcacct tagccttggt gctcagtgat ctccacccag gccctactcc ttccccagtt
     1141 gcttgtttgg tagcccaagg aaaggcagag cccagcatct tgtgccccag agctctatgt
     1201 gaggagttgt ctgggcccag catctaccac caatgaaatg agatggggac cctggtgggc
     1261 ctcatcaatg tttgatccag gttggatgtc ttgtggggcc ccgtatgtta acaatgcaag
     1321 actagcacat ggctgtcggg ttttctgggc ctgctgttgg ggatcactaa atttaaggct
     1381 tccagatccc tggcgggagt agatcccaaa ctgctttctc agtacatttg ctccaaactt
     1441 ctgaacttga gggcaatact aaaataaaag agttttttat tacaaaatta ttatttttat
     1501 ggtaccttta acaaggaccc tatggcaaat gcacaattat tccgaattac attttatcgt
     1561 tttcacattg aaaacagcaa atgttgactt agtgactttt atatctatgt ctatatgtat
     1621 atttaatcaa ccagcagttt taaaacaagt catcctggta caaaagtttt gcagcattgc
     1681 ttaaattaca gtgctaaaca caagaactgt ttccagggcc agctgagcat ttgcacccct
     1741 ccttttgcta ctcagaacac cagtgtgtca tgacaaccct ttccaaaggc agaggggcct
     1801 ccattctccg gagaggatga ttcagatgtt ggcaggcgtg gtcaggaaga aatgcgctca
     1861 aataactcga ggctcatgtg ccaaagtgtg agggagggga gtggtttggt ttggtttggt
     1921 ttggtttttc taaatgttta aaaagcttaa taggttggca tcagttgtag tccacaatat
     1981 gtcaggactt tggggaattc tggtgattta caggtctaaa cacaaggaaa aagctttaac
     2041 atgaatgcag catcagggct gggagtgcag ctgatggcac acgagcttgt cacacaggag
     2101 gacctcgctt cttttgcttc cattccctgt gtgggaaaag gaacacgaag gggtagcagg
     2161 gtggccggcc tcgcattgtg ctggatgtta ctgactatct ggagagcctt aaaggagcag
     2221 aagtggggaa aggaaccagc aggtacttgt gatatccata ctcccaagac ttacccattc
     2281 agtaaagttg gagcccagaa accataaaaa taaatcatcc caagacttag gtagaaaaaa
     2341 aataattcac atccattgct agggctgaat caacggttcc tttccctcaa aaagcaattt
     2401 gggtatgacg gtgcacctat agtcccagct actcactcag aagcctgagc ccatgaataa
     2461 gagtcagtct aaggtgaaac taaacttcat ctgataccaa aagcaactga atatcagatg
     2521 tccgcctctg atcagaaact cctggtttat accacgggac accattgctt taattaagct
     2581 gagggacaac actgaagatt gaaggaggct gagagactgg ctctgctggc tttttccctg
     2641 cagcaccctc ggctcctctg actgtccttt ccaccatgcc gttgagccct tgtgtgcgtg
     2701 cagtagatgg agttaccctg aagtcacctt gagcttgtgt ataactcaag tagcacatct
     2761 gtgaccagct cctcttgtaa actgggcagg ccaggttgaa gctagggatt tcctccctgt
     2821 accttcccct ccctttgttt cttttaatct ctttgtagtc gtctcacttt gtaactctgg
     2881 ctggcctgga gctcgctttg tagcccaggc agaccttgaa ctcactgaga tcacctgact
     2941 actcagagta ctaggattaa aggtgtaagc caccacacct gcttttactc tcttagctag
     3001 ggaagtgttc ctgctctgct tagaaagatg agggaaggat gccttcagca gccttcagac
     3061 ccacccgaag acttgctgct tagaagtctg cccctgcgca ctgggaagga ataaacatgt
     3121 tccacttcct agtaacttcc acctggtgga ctgtaactac ttttcctttt ctgtccctgg
     3181 aggacctctg ggaacgtgtc tcccttagta gctctttctc tagctgtctg ggtggtttac
     3241 acgcctctgg tactgtgtgc aatatctttg actgatgctt gtatctaaca ttgaaaaata
     3301 agtgcagact gcaaatttcc tactgttctt gtccagcaag ccagccccca ggcagggact
     3361 aggtctggct ggccttaccc tccgctcaga aggctccact gctgtggcca gctgtggccc
     3421 tctcattccc tgcttaccca tctacccacc tatctccttt aagattgtct agcatttcag
     3481 ctgcagtcca aaagtaagta gacaatgcct aataccaagt agacagttgg tataccggcc
     3541 ctgttagcag tgttggagtc agactccagt ggaacaaagg ggtttctcaa cgtcttctgc
     3601 tttcagaagc agggaattta tattcccttt aaggccttga atggattgtt tttcctcata
     3661 agatagtcac tgataagcta atttttaaaa agaaatgcca ttaagtatgt tacattgtgg
     3721 tttaaaatta ctaacaagtt ctgggaaaga aaaatacttg attttgaaac ttaaatgttt
     3781 tttaaaaatt agatttgaat gggcacaaaa tatgaatatt ttgtttcttt atggaagacc
     3841 tgtggaaagg gtttgaagat ttgcaatggg agaagtattt tgcagagcta tcaatgtcta
     3901 aataattttt aaaaaaaaaa taataataaa ggtatttaag cagtgtg
//
