LOCUS       NM_001037583            1236 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus glycoprotein, alpha-galactosyltransferase 1-like
            1 (Ggta1l1), mRNA.
ACCESSION   NM_001037583 XM_017592029
VERSION     NM_001037583.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1236)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On or before Nov 8, 2022 this sequence version replaced
            XM_017592029.2, NM_001037583.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.1489874.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-105               JAXUCZ010000003.1  39098966-39099070   c
            106-185             JAXUCZ010000003.1  39097743-39097822   c
            186-221             JAXUCZ010000003.1  39096194-39096229   c
            222-269             JAXUCZ010000003.1  39090100-39090147   c
            270-407             JAXUCZ010000003.1  39083405-39083542   c
            408-1236            JAXUCZ010000003.1  39082150-39082978   c
FEATURES             Location/Qualifiers
     source          1..1236
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p11"
     gene            1..1236
                     /gene="Ggta1l1"
                     /gene_synonym="Ggta1; Glt6d1"
                     /note="glycoprotein, alpha-galactosyltransferase 1-like 1"
                     /db_xref="GeneID:652927"
                     /db_xref="RGD:1565200"
     exon            1..105
                     /gene="Ggta1l1"
                     /gene_synonym="Ggta1; Glt6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            106..185
                     /gene="Ggta1l1"
                     /gene_synonym="Ggta1; Glt6d1"
                     /inference="alignment:Splign:2.1.0"
     CDS             112..1077
                     /gene="Ggta1l1"
                     /gene_synonym="Ggta1; Glt6d1"
                     /EC_number="2.4.1.87"
                     /note="glycosyltransferase 6 domain-containing protein 1;
                     ABO-family member protein 5; galactosyltransferase;
                     UDP-galactose:beta-D-galactosyl-1,
                     4-N-acetyl-D-glucosaminide
                     alpha-1,3-galactosyltransferase; N-acetyllactosaminide
                     alpha-1,3-galactosyltransferase; ABO-family member 5"
                     /codon_start=1
                     /product="N-acetyllactosaminide
                     alpha-1,3-galactosyltransferase-like 1"
                     /protein_id="NP_001032672.2"
                     /db_xref="GeneID:652927"
                     /db_xref="RGD:1565200"
                     /translation="MQYKKETLLLILLAILLALTQRYSRTKDHLQKMYTCWRDHLEEP
                     QLESWFNPKKRPDVIATTGWLAPVLWEGTYDREVLEQYYKRLNITVGLAVFATGNFSS
                     ESLRRFIKSANKYFMVGYNVIFYILADGTSNLPYLELGPLRTLKMWRLSGEEMTYEDS
                     NLRNMNNMRYKIMEHIQYEVNFLFVMTANQIIKNHFGVETLGRSVAQLHAWWYFKQPR
                     EFPYERRRKASAFIAFEEGDFYYHSAIVGGTPLDVLDLIEHYIKGIIDDRTNELSSTY
                     ERHLNKYFFIKKPVRVLSPEYNWDPRFKTPPEIWHIKVAWQPRIT"
     exon            186..221
                     /gene="Ggta1l1"
                     /gene_synonym="Ggta1; Glt6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            222..269
                     /gene="Ggta1l1"
                     /gene_synonym="Ggta1; Glt6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            270..407
                     /gene="Ggta1l1"
                     /gene_synonym="Ggta1; Glt6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            408..1236
                     /gene="Ggta1l1"
                     /gene_synonym="Ggta1; Glt6d1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgacgtcac caggagagaa cactcctcaa cagaaggata ccacacccta cctgagctgg
       61 tattttcttt tcctaccatt cctctttaca ttatcaaaac taaaggaagg aatgcagtat
      121 aaaaaagaaa cactgttgct aattctgctt gctatattgc tagcactaac tcagcgctac
      181 tccagaacaa aggatcacct acagaagatg tacacctgct ggagagatca tctggaagaa
      241 cctcagctcg agtcttggtt taatccaaaa aaacgtcctg atgttatagc aacaactggt
      301 tggctcgctc cagtcttatg ggaaggaact tatgacagag aagttctaga acaatattat
      361 aagagactga acatcaccgt aggcttggct gtctttgcta ctggaaactt ttcaagtgag
      421 tccctgagac gcttcataaa atctgccaat aagtacttca tggttggcta caatgttatt
      481 ttctacatct tggctgatgg cacgagcaat ctaccatacc ttgagttggg tcctcttcgg
      541 acacttaaaa tgtggaggct ctctggagaa gagatgactt atgaagacag taatctcagg
      601 aacatgaata acatgcgata caaaatcatg gaacatattc aatatgaagt caactttctc
      661 ttcgtgatga ctgcgaacca gatcatcaag aaccactttg gagtagaaac cttgggcaga
      721 tctgtagctc aactccatgc atggtggtat ttcaaacagc ccagagagtt cccttatgag
      781 agaagaagga aagcctcagc tttcattgcc ttcgaagagg gagatttcta ttaccacagt
      841 gccattgttg gtggcacgcc cctagatgtc ttagatctca tcgaacacta tataaaggga
      901 attatagatg acaggacaaa tgaactttct agcacgtatg aaagacacct aaataaatat
      961 ttttttatca aaaaacccgt tagggtgtta tcaccagagt acaactggga tccaagattt
     1021 aaaactcctc cagaaatctg gcatattaag gtagcatggc aaccacgaat cacttaacgg
     1081 ttgtgccgtg gggtttgtga aatcgcaagt aaatagcagg gtattcttca aaaataaaac
     1141 tttgggaaac gtacaaaagt atataatctt tcagaataaa ttgtctttga aattataatt
     1201 ctccttagtc tgaatagaag taaacagata agtatt
//
