LOCUS       NM_145674               1448 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus glycoprotein alpha-galactosyltransferase 1
            (Ggta1), mRNA.
ACCESSION   NM_145674
VERSION     NM_145674.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1448)
  AUTHORS   Fullmer,J.M., Riedl,M., Williams,F.G., Sandrin,M. and Elde,R.
  TITLE     Enzymes that synthesize the IB4 epitope are not sufficient to
            impart IB4 binding in dorsal root ganglia of rat
  JOURNAL   J Comp Neurol 501 (1), 70-82 (2007)
   PUBMED   17206613
REFERENCE   2  (bases 1 to 1448)
  AUTHORS   Taylor,S.G., McKenzie,I.F. and Sandrin,M.S.
  TITLE     Characterization of the rat alpha(1,3)galactosyltransferase:
            evidence for two independent genes encoding glycosyltransferases
            that synthesize Galalpha(1,3)Gal by two separate glycosylation
            pathways
  JOURNAL   Glycobiology 13 (5), 327-337 (2003)
   PUBMED   12626403
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF520589.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF520589.1, FQ222249.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1448
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BDIX"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p11"
     gene            1..1448
                     /gene="Ggta1"
                     /gene_synonym="Ggta1p"
                     /note="glycoprotein alpha-galactosyltransferase 1"
                     /db_xref="GeneID:246766"
                     /db_xref="RGD:629476"
     exon            1..43
                     /gene="Ggta1"
                     /gene_synonym="Ggta1p"
                     /inference="alignment:Splign:2.1.0"
     exon            44..159
                     /gene="Ggta1"
                     /gene_synonym="Ggta1p"
                     /inference="alignment:Splign:2.1.0"
     exon            160..336
                     /gene="Ggta1"
                     /gene_synonym="Ggta1p"
                     /inference="alignment:Splign:2.1.0"
     CDS             244..1359
                     /gene="Ggta1"
                     /gene_synonym="Ggta1p"
                     /EC_number="2.4.1.87"
                     /note="glycoprotein galactosyltransferase alpha 1, 3;
                     glycoprotein, alpha-galactosyltransferase 1,3;
                     UDP-galactose:beta-D-galactosyl-1,
                     4-N-acetyl-D-glucosaminide
                     alpha-1,3-galactosyltransferase"
                     /codon_start=1
                     /product="N-acetyllactosaminide
                     alpha-1,3-galactosyltransferase"
                     /protein_id="NP_663707.1"
                     /db_xref="GeneID:246766"
                     /db_xref="RGD:629476"
                     /translation="MVTMPQDLHVKVSMSRSKSETSLLSSRSGSQEKIMNVKGKIILS
                     VLMVSTVLVVFWEYVNRTHSYQEEDIERAREKGRNGDSIVEPQLWDWFNPKNRPEVLT
                     VTPWKAPIVWEGTYDTALLEKYYARQKITVGLTVFAVGKYIEHYLEDFLESANKYFMV
                     GHRVIFYVMMDDTSRMPAVHLSPLHSLQVFEIRSEKRWQDISMMRMKTIGEHILDHIQ
                     HEVDFLFCMDVDQVFQDNFGVETLGQLVAQLQAWWYKASPDEFTYERRELSAAYIPFG
                     EGDFYYHAAVFGGTPVHILNLTRECFKGILQDKKHDIEAQWHDESHLNKYFLFNKPTK
                     ILSPEYCWDYHIGLPSDIKNVKIAWQTKEYNLVRSNV"
     exon            337..425
                     /gene="Ggta1"
                     /gene_synonym="Ggta1p"
                     /inference="alignment:Splign:2.1.0"
     exon            426..527
                     /gene="Ggta1"
                     /gene_synonym="Ggta1p"
                     /inference="alignment:Splign:2.1.0"
     exon            528..665
                     /gene="Ggta1"
                     /gene_synonym="Ggta1p"
                     /inference="alignment:Splign:2.1.0"
     exon            666..1448
                     /gene="Ggta1"
                     /gene_synonym="Ggta1p"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagaaatacc gattctgctg aagacctcac tctcaggatc tgggagttgg agccctgtac
       61 cttcctttcc tctgagtcct gtctccttcg gcaggcggga gctccataga actcggttgc
      121 tctgctgttt gctttggaga ggacacagcg gacgatgagg ttgactatga actcaagaga
      181 tatacttacc ccagtctcct ggaattaaag gcctgtaccg ccttgcctgg acctaagatt
      241 atcatggtta ctatgcctca agatctccac gtcaaggtct ccatgtcaag atccaagtca
      301 gaaacaagtc ttctatcctc aagatctgga tcacaggaga aaataatgaa tgtcaagggg
      361 aaaataatcc tgtcggtgct gatggtctca accgtgcttg tcgtgttttg ggaatatgtc
      421 aacaggaccc acagttatca agaagaggac atagagagag cgagagaaaa ggggagaaat
      481 ggagacagca ttgtagagcc tcagctctgg gactggttca atccaaagaa ccgcccggag
      541 gttttgacgg tgaccccgtg gaaggcgccg attgtgtggg aaggcactta cgacacagct
      601 ctgttggaaa agtactatgc cagacagaaa atcactgtgg ggttgacagt ttttgctgtg
      661 ggaaagtaca ttgagcatta cttagaagac tttctggagt ctgctaacaa gtacttcatg
      721 gtcggccacc gggtcatatt ttacgtcatg atggacgaca cctccagaat gccggccgtc
      781 catctgagtc ctctgcattc cttgcaagtg ttcgagatca ggtctgagaa gagatggcag
      841 gatataagca tgatgcggat gaaaaccatc ggggagcaca tcctggacca catccagcac
      901 gaggttgact tcctcttctg catggacgtg gaccaagtct ttcaagacaa cttcggtgtg
      961 gagaccctgg gccagttggt agctcagctc caggcctggt ggtacaaggc cagccctgac
     1021 gagtttacct atgagaggcg ggaactctcg gcagcctaca ttccattcgg agagggggat
     1081 ttttactacc acgcggccgt ttttggagga acgcccgttc acattctgaa cctcaccagg
     1141 gagtgcttta aggggatcct ccaggacaag aaacatgaca tagaagccca gtggcatgac
     1201 gagagccacc tcaacaaata cttccttttc aacaaaccca ctaaaatcct atccccggag
     1261 tattgctggg actatcatat aggcctgccc tcagatatta aaaatgtcaa gatagcttgg
     1321 cagacaaaag agtataattt ggtgagaagc aatgtctgac ttcaaacgtg atggaaacct
     1381 gacaccatta ttctggtgaa tccctctaaa aagcagtaac acttgatttc aacttttaaa
     1441 aaaagtcc
//
