LOCUS       NM_001305187            1019 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus glycerophosphodiester phosphodiesterase domain
            containing 3 (Gdpd3), mRNA.
ACCESSION   NM_001305187 XM_002725663 XM_002728806
VERSION     NM_001305187.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Ohshima,N., Kudo,T., Yamashita,Y., Mariggio,S., Araki,M., Honda,A.,
            Nagano,T., Isaji,C., Kato,N., Corda,D., Izumi,T. and Yanaka,N.
  TITLE     New members of the mammalian glycerophosphodiester
            phosphodiesterase family: GDE4 and GDE7 produce lysophosphatidic
            acid by lysophospholipase D activity
  JOURNAL   J Biol Chem 290 (7), 4260-4271 (2015)
   PUBMED   25528375
REFERENCE   2  (bases 1 to 1019)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Feb 27, 2015 this sequence version replaced
            XM_002728806.4, XM_002725663.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.4363.1,
                                           SRR26643295.4146.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN09345238, SAMN09345329
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-139               JAXUCZ010000001.1  190804053-190804191
            140-182             JAXUCZ010000001.1  190804487-190804529
            183-318             JAXUCZ010000001.1  190804764-190804899
            319-364             JAXUCZ010000001.1  190804980-190805025
            365-483             JAXUCZ010000001.1  190805141-190805259
            484-573             JAXUCZ010000001.1  190805338-190805427
            574-707             JAXUCZ010000001.1  190806129-190806262
            708-767             JAXUCZ010000001.1  190809177-190809236
            768-819             JAXUCZ010000001.1  190809353-190809404
            820-1019            JAXUCZ010000001.1  190813410-190813609
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q36"
     gene            1..1019
                     /gene="Gdpd3"
                     /gene_synonym="RGD1308386"
                     /note="glycerophosphodiester phosphodiesterase domain
                     containing 3"
                     /db_xref="GeneID:293490"
                     /db_xref="RGD:1308386"
     CDS             1..963
                     /gene="Gdpd3"
                     /gene_synonym="RGD1308386"
                     /note="glycerophosphodiester phosphodiesterase
                     domain-containing protein 3"
                     /codon_start=1
                     /product="lysophospholipase D GDPD3"
                     /protein_id="NP_001292116.1"
                     /db_xref="GeneID:293490"
                     /db_xref="RGD:1308386"
                     /translation="MIPLVYFVLPTLGSYVILSIFFLRRPHLLHTPWAPGFSIRLAAH
                     RGGSGERLENTMEAIENSMAQRADLLEFDCQLTRDGVVVVSHDKNLSRQSGLNKDINT
                     LDFAQLPLYKEELEIYFSPGHFAHGSDRHMISLEDVFQKFPRTPMCLEIKEKNEELIH
                     KVANMARRFNRNEITIWTSEKNSIMKRCKAANPEMPTAFTIWRSFWILLLYYLGLLPF
                     VSIPEKFFFCFLPTIINRTYFPFSCGWMNKLSATVTKWAIMRKSLIQYLQDRGVQVLF
                     WCLNEESDFEVAFSLGANGVMTDYPTALRHYLDKQEQRDSASSV"
     exon            1..139
                     /gene="Gdpd3"
                     /gene_synonym="RGD1308386"
                     /inference="alignment:Splign:2.1.0"
     exon            140..182
                     /gene="Gdpd3"
                     /gene_synonym="RGD1308386"
                     /inference="alignment:Splign:2.1.0"
     exon            183..318
                     /gene="Gdpd3"
                     /gene_synonym="RGD1308386"
                     /inference="alignment:Splign:2.1.0"
     exon            319..364
                     /gene="Gdpd3"
                     /gene_synonym="RGD1308386"
                     /inference="alignment:Splign:2.1.0"
     exon            365..483
                     /gene="Gdpd3"
                     /gene_synonym="RGD1308386"
                     /inference="alignment:Splign:2.1.0"
     exon            484..573
                     /gene="Gdpd3"
                     /gene_synonym="RGD1308386"
                     /inference="alignment:Splign:2.1.0"
     exon            574..707
                     /gene="Gdpd3"
                     /gene_synonym="RGD1308386"
                     /inference="alignment:Splign:2.1.0"
     exon            708..767
                     /gene="Gdpd3"
                     /gene_synonym="RGD1308386"
                     /inference="alignment:Splign:2.1.0"
     exon            768..819
                     /gene="Gdpd3"
                     /gene_synonym="RGD1308386"
                     /inference="alignment:Splign:2.1.0"
     exon            820..1019
                     /gene="Gdpd3"
                     /gene_synonym="RGD1308386"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgatccccc tcgtgtactt cgttctgccc accctgggca gctatgtaat tctctccatc
       61 ttcttcctgc gccgacctca cctgctgcac acaccctggg ctccagggtt ctccatccgc
      121 ctggctgcac accgtggagg gtctggggag cggctggaga acaccatgga ggcaatagag
      181 aattccatgg cccagagagc agatctcttg gaatttgact gccagctcac ccgagatggc
      241 gtggtggtag tgtcacacga caaaaacctg tcccgccagt caggcctaaa taaggatata
      301 aacaccctgg actttgcgca actgcccctc tacaaggaag aactggagat ttacttctcg
      361 ccaggccatt ttgctcacgg gtcagaccgg cacatgatta gtttggagga tgtattccag
      421 aaatttccaa ggactcccat gtgcttggag atcaaagaaa aaaatgaaga actcattcac
      481 aaggtagcca acatggcgag gcgctttaac cgaaacgaga ttactatttg gacttcagag
      541 aagaactcaa tcatgaagag atgcaaggct gccaaccctg agatgcccac ggccttcaca
      601 atatggcgat cattctggat actgctgctc tactacctgg ggctactgcc ttttgtctcc
      661 atccctgaga agtttttctt ctgtttcctg cccaccatca tcaacaggac ttactttcca
      721 ttttcctgtg gatggatgaa caaactgtcg gctacagtta caaaatgggc catcatgagg
      781 aaaagtctga tccaatactt gcaggaccga ggggtacagg tgctattttg gtgccttaat
      841 gaagaatcag attttgaagt ggccttcagc ttgggagcca atggcgtcat gactgattac
      901 cccacagccc taagacacta cctggacaag caggaacaaa gagactcagc ctcctcagtc
      961 tgaggccctg tcctgtcttt ctcttaagga aaaataaata aatattttct tgtcagtaa
//
