LOCUS       NM_001044238            2270 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus glycerophosphodiester phosphodiesterase domain
            containing 1 (Gdpd1), mRNA.
ACCESSION   NM_001044238 XM_001081147 XM_039086049 XM_220818
VERSION     NM_001044238.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2270)
  AUTHORS   Tsuboi,K., Okamoto,Y., Rahman,I.A., Uyama,T., Inoue,T., Tokumura,A.
            and Ueda,N.
  TITLE     Glycerophosphodiesterase GDE4 as a novel lysophospholipase D: a
            possible involvement in bioactive N-acylethanolamine biosynthesis
  JOURNAL   Biochim Biophys Acta 1851 (5), 537-548 (2015)
   PUBMED   25596343
REFERENCE   2  (bases 1 to 2270)
  AUTHORS   Ohshima,N., Kudo,T., Yamashita,Y., Mariggio,S., Araki,M., Honda,A.,
            Nagano,T., Isaji,C., Kato,N., Corda,D., Izumi,T. and Yanaka,N.
  TITLE     New members of the mammalian glycerophosphodiester
            phosphodiesterase family: GDE4 and GDE7 produce lysophosphatidic
            acid by lysophospholipase D activity
  JOURNAL   J Biol Chem 290 (7), 4260-4271 (2015)
   PUBMED   25528375
REFERENCE   3  (bases 1 to 2270)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On or before Mar 26, 2021 this sequence version replaced
            XM_039086049.1, NM_001044238.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22399492.1074731.1,
                                           SRR22399481.3061544.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-227               JAXUCZ010000010.1  72380917-72381143   c
            228-270             JAXUCZ010000010.1  72369763-72369805   c
            271-406             JAXUCZ010000010.1  72364410-72364545   c
            407-452             JAXUCZ010000010.1  72361710-72361755   c
            453-571             JAXUCZ010000010.1  72349503-72349621   c
            572-661             JAXUCZ010000010.1  72348926-72349015   c
            662-795             JAXUCZ010000010.1  72345778-72345911   c
            796-855             JAXUCZ010000010.1  72341600-72341659   c
            856-907             JAXUCZ010000010.1  72339455-72339506   c
            908-2270            JAXUCZ010000010.1  72337775-72339137   c
FEATURES             Location/Qualifiers
     source          1..2270
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q26"
     gene            1..2270
                     /gene="Gdpd1"
                     /gene_synonym="RGD1311813"
                     /note="glycerophosphodiester phosphodiesterase domain
                     containing 1"
                     /db_xref="GeneID:303407"
                     /db_xref="RGD:1311813"
     exon            1..227
                     /gene="Gdpd1"
                     /gene_synonym="RGD1311813"
                     /inference="alignment:Splign:2.1.0"
     CDS             86..1030
                     /gene="Gdpd1"
                     /gene_synonym="RGD1311813"
                     /EC_number="3.1.4.39"
                     /note="glycerophosphodiester phosphodiesterase
                     domain-containing protein 1; glycerophosphodiester
                     phosphodiesterase 4"
                     /codon_start=1
                     /product="lysophospholipase D GDPD1"
                     /protein_id="NP_001037703.1"
                     /db_xref="GeneID:303407"
                     /db_xref="RGD:1311813"
                     /translation="MSSTAAFCLLSTLGGYLVTSFLLLKYPALLHQRKKQRFLSRHIS
                     HRGGAGENLENTMAAFQHAVTIGTDMLELDCHITKDEQVVVSHDANLKRSTGVNVNVS
                     DLKYCELPPYLCKLDVPFQRACKCEGTDTRIPLLKEVFEAFPETPINIDIKVNNNVLI
                     QKVSELVKQYKREHLTVWGNASSEIVDKCYKENSDIPILFSLQRVLLILGLFFTGLLP
                     FVPIREQFFEIPMPSIILKLKEPHIISKGHKFLIWLSDTLLMRKALFDHLTARGIQVY
                     IWVLNEEHEYKRAFDLGATGVMTDYPTKLKEFLNNMSA"
     exon            228..270
                     /gene="Gdpd1"
                     /gene_synonym="RGD1311813"
                     /inference="alignment:Splign:2.1.0"
     exon            271..406
                     /gene="Gdpd1"
                     /gene_synonym="RGD1311813"
                     /inference="alignment:Splign:2.1.0"
     exon            407..452
                     /gene="Gdpd1"
                     /gene_synonym="RGD1311813"
                     /inference="alignment:Splign:2.1.0"
     exon            453..571
                     /gene="Gdpd1"
                     /gene_synonym="RGD1311813"
                     /inference="alignment:Splign:2.1.0"
     exon            572..661
                     /gene="Gdpd1"
                     /gene_synonym="RGD1311813"
                     /inference="alignment:Splign:2.1.0"
     exon            662..795
                     /gene="Gdpd1"
                     /gene_synonym="RGD1311813"
                     /inference="alignment:Splign:2.1.0"
     exon            796..855
                     /gene="Gdpd1"
                     /gene_synonym="RGD1311813"
                     /inference="alignment:Splign:2.1.0"
     exon            856..907
                     /gene="Gdpd1"
                     /gene_synonym="RGD1311813"
                     /inference="alignment:Splign:2.1.0"
     exon            908..2270
                     /gene="Gdpd1"
                     /gene_synonym="RGD1311813"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agacctcgag cagccgccgg cgccgctgcc gtttttacca tcgcagcaca gtccggggct
       61 caggcccagg aggcggtgac caaggatgtc gtccaccgcg gctttttgcc ttctctctac
      121 tctgggaggg tatttggtca cctcgttctt gttacttaaa tacccagcgt tgctccacca
      181 gagaaagaaa cagcgattcc tcagtaggca catctctcac cgcggaggtg ctggagaaaa
      241 cctggagaac acaatggctg ccttccagca cgcagttacc attgggacgg acatgttaga
      301 actggactgc catatcacaa aagatgagca ggttgtagtg tcacatgatg caaatctgaa
      361 gaggtcaact ggggtcaatg taaacgtctc tgatctcaaa tactgtgagc tcccacctta
      421 cctttgcaaa ctggatgtcc catttcagag agcatgcaag tgtgaaggaa cagatacccg
      481 gattcccttg ctgaaggaag tgtttgaggc ctttcctgag acccccatta acatcgacat
      541 caaagtgaac aacaacgtgc tgattcagaa ggtctcagaa ctggtgaagc agtacaagcg
      601 cgaacacctg acagtgtggg gcaatgccag ctctgagatt gtagacaagt gttacaaaga
      661 gaactcagat atccctatcc tcttcagcct gcagcgtgtt ctgctcatcc ttggcctttt
      721 cttcactggc ctcttgccct ttgtgcccat tcgagagcag ttctttgaga tcccaatgcc
      781 ctccatcata ctgaagctaa aagaaccgca cattatatcc aaaggtcata agtttctcat
      841 ctggctttcg gacaccttat taatgcggaa agctttattt gaccacctca ccgcccgggg
      901 cattcaagta tacatttggg ttttaaatga agagcatgag tacaaaagag cttttgattt
      961 gggggccacg ggagtgatga cggactatcc aacgaagctt aaggagttct taaataacat
     1021 gtcagcatga agcactccag atcattgaga ggagtcatga tcagaaaaga tctgaggaaa
     1081 ggtgtgttag ccacggttcc cctggggtct ccaggacgat aaaaggttta atcagttaag
     1141 ttttaatacc tcatttctta agtctgtatg ggaatgtaga aacttcccta aattgtatat
     1201 ttattttctc caatattgca tattttacac tgggaacttg tttggagtta accagcgctg
     1261 aaatgtagat cattgatcag gatgtctgca tatgatgcag tactctatta ttgtaaatct
     1321 gaaatcaaag gctagaggta aattgggcgt tagccttccc tgaaatagga tcaaccgtgg
     1381 taaaaggttc ctgagcgggg catggtatca tgagcctgcg atcccagcac acggggggct
     1441 gaggcaagag ggcaggggtt tgaggccagc ttgggctaca tagtgaaatg ccgtcttcaa
     1501 aagttttttt gtttagttaa aaagaaaatt attgaaggcc gttacagcca ttttgaattg
     1561 tctcgtatgt ctaggtgtat ttttagttaa cggaaataca ggggaagagg agtctgaaag
     1621 agatgtgtag tactcgccca gcagggtgga tgctgttcgc agagggcaga ttcaagcaag
     1681 taacagtttg ttattactca gatccaggct gtggctgaga cagactcctg ggctgcggtt
     1741 gttaatgggg catcccggtt ggagtctttt tttcaggtgt atgacagtgc tgtcatgtct
     1801 atttttttac gtctttaaaa atagacatta taactataaa ataagacaag atccaattag
     1861 tcttgttttg tgtttcctca agaaatactc agttcttatc ttttgggcgc gactaggctg
     1921 agcctggacc tgggctgtga actagtggtt gagctggtgg aaggaagcgc ggcgccactg
     1981 cgggcatgtt tagcatgagc cacgtgctcg atcgctaagg ctcggacaca gcgagagtta
     2041 acccgcatta tacaccactt cctctgcctc ccgatgtgac ttcacgcaga tctgcctctg
     2101 gccttttgac taattttcat gatgtcagat tgggagataa attcagtgta gagtactaga
     2161 cgccttttgc ctagattacg tctctgctgt ggggcagcca tggaggacag cctcaccctc
     2221 cttctgtcgc tctgtggtct aaattgtaat aaagttttcc aagaatgaaa
//
