LOCUS       XM_001064866            3799 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus germinal center-associated, signaling
            and motility (Gcsam), transcript variant X1, mRNA.
ACCESSION   XM_001064866
VERSION     XM_001064866.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_001064866.7.
            
            On Jan 21, 2021 this sequence version replaced XM_001064866.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3799
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3799
                     /gene="Gcsam"
                     /note="germinal center-associated, signaling and motility;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 ESTs, 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 46 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:685692"
                     /db_xref="RGD:1591321"
     CDS             162..710
                     /gene="Gcsam"
                     /codon_start=1
                     /product="germinal center-associated signaling and
                     motility protein isoform X1"
                     /protein_id="XP_001064866.2"
                     /db_xref="GeneID:685692"
                     /db_xref="RGD:1591321"
                     /translation="MGNCLQRTTRWQLDMQETPWNLRLQNAKGRPCRYFKGWSCCHIV
                     EGCSCLPWKNISTFKARQESPKQNEGMTSAPIQDNANETYTEELCYILVDHKALRGRP
                     SGKPAEGLYENISNKVDRHRESSRGTETEYSVLRFSSTSQPLPSTEDEYELLVPSRFS
                     SYANQQPQPLTAPFETHFSHLQ"
ORIGIN      
        1 gttaggcacc tcctctttct ggctgtctac aagggtggcc agagctgctc tcaccctgct
       61 gtcagttgga aactgccagt taccgagcac gagcaagacc aaggtgcaag ctaggtgaga
      121 aggaagtgga gactaccaga gggaaggcgc tcaggagact gatggggaac tgtctgcaga
      181 ggacaaccag gtggcagctg gacatgcagg aaacaccttg gaatctgaga ctgcaaaatg
      241 ccaaggggag gccttgcaga tatttcaagg gctggagttg ttgtcacatc gttgaaggat
      301 gttcctgcct cccttggaaa aacataagca catttaaagc tcgacaagag tctccaaagc
      361 aaaatgaagg gatgacttca gctcccattc aggacaatgc taatgagacc tacacagaag
      421 agttatgcta catccttgtc gatcacaaag ccctcagggg aaggccatca ggcaagcctg
      481 ctgaggggtt atatgagaac atctctaaca aggtggaccg acacagagag tcttcaagag
      541 gaacagagac tgagtattca gttcttcgtt tctcttctac ctctcagccc ctaccttcca
      601 cagaagatga atatgaactt cttgtaccca gccgattctc ctcatatgcc aatcaacagc
      661 cacagcctct tacagccccc tttgagaccc acttttctca tctacaatga agtgactagt
      721 tagagtttct ttagcactga cagataaaag taggagttca ggactgtagt tgaagcagtc
      781 atgggtcatg gagatcctta gcttatttct tctggagggc tttggcccag cagactctgc
      841 aaaccgcaga gcctctcaga gtctgacaat agccagcatt caaaaattag tcaactgtct
      901 tgaacatcac attgaaaaag agagtaacca cctttgtttc taagtggtgt taaaaataat
      961 ctgtggtggg aagaggtccc agtattgaca atgaggtgta ccacaaaagg ctctgttctt
     1021 ctcactaact tctcatgaat catccccaca actgtactct acagtcaggg gactcttagt
     1081 catcgtgttc catgacccca gagagaatcc ctcatcaccg ttaagttcca gctcggcacc
     1141 acttgctatg gaaaccggga atattttctt tattccatga atctaagaca tgtcctttat
     1201 ctagtgtcct tggactcacg gtccccatga ctcagaattt ctcgtaccat cattaatata
     1261 attttaaaca gtatttttaa actttgacct tctcatcaga cttgtctttc tcctatggct
     1321 caggtaaaca ttaccagaac ctcctccacg ctaagcaagt gatctgccat gaagagacag
     1381 ctcaaatgct gccagtagaa ataccacagt gccagggatt gaaagaatag gaagtttctg
     1441 gagagccaac tatcttctct ttttactgag agaatattgt ttgctccatg gtacattttg
     1501 gctgcctact atatatggta cagtaagttg gtccataaat ggtctcatgt ctgcatggga
     1561 gaagtaacac agacctcttc tctatgagca cccctctacg gcttgattcc ttattttcca
     1621 tttttgtttt ctttagtatt tctggattca tgtccatact aagttagtca attatgcaca
     1681 atctactgac tggcctaatc tagcctgcca cctggattct tgtagataaa ggttgattga
     1741 aacccagctg cactgatttg tctacatact acctttggct gctcaaccgt ggtaaaattg
     1801 atttgtgcca caaaccagag gctttacaaa gctaaaaata tctgtaattg aacctattct
     1861 agataataat tttgcagacc tctgccttaa acagttacag tttaagataa acgggagagg
     1921 atcacatttg gttattgaca agctcgttag gagcagatgc caatgaactg gcagggaaaa
     1981 tattaaacca caaaggagat gagcaagacg aaaacaacta ctagcaaatg agactatttc
     2041 catgttcaca cctgcacccg caaggtgttg ttttatttac ttcatggcca ttgtcctaat
     2101 tttagggatg ctaaattgtc aagatgtttg ttgagatgag cttgggaggt cctctgcatc
     2161 taattactgt cttgttatta aagctgaata actttctatt taaaatgccc caaggcatta
     2221 gggaggtagc tcagtagtaa ggtagcatgt acaaggtata cagagagaga gagagagaga
     2281 gagagagaga gagagagaga gaggaaggaa ggaaggaagg aaggaaggaa ggaaggaagg
     2341 aaggaaagaa gaaaaacaga caagaagaga aaagaaagca caaaacaggc caagtgccca
     2401 ctaagagtgg ctaaatccag aggcttaagg tactttgaat gactttgctg agacataaat
     2461 cacttgatca cctccaccta aagagctaac aagatctcag tacctcagcc tccattaact
     2521 tcctttttta caaatatctt tcaggcagaa gcctaagtac agtgtttggc cagaagtcac
     2581 ttgggtacaa aggatgtgtt cacaaagata agaaatgctg ttatgagatg ttacacgtgg
     2641 tttgtggggg gacaagtgtg ggccagagat tgattcaaat cttatttcct tttcacgctc
     2701 cttttagccc gacccacttt cttgtaggct cagtgtattg caaccataca gtggggaggg
     2761 ctgcatttga tatatagtta cccattctag ttttctttca actgtgggaa taaaacactg
     2821 accaaaagct aattggagaa gaaagagttt atttgcctta catgtcccaa ccatagttca
     2881 tcctggcagg agcttgaggt gagaactgat gtggacgtca tggagaaatg ctacttactc
     2941 tctttcttat acaactcagg gccatctgat cagaggtggc actgcagttg tctgggccct
     3001 cctacatcaa ctgtcaatca ggatgatgtc ccatagaaac acccccagga cagtccaatg
     3061 gagtcgattg ctaaagtgag gttccttctt ctcaagtaac tcaattttgt atcaagttga
     3121 taaacaaaac aaaaccctca ccgttttatc atctatccta gaccttcagg atgaaggata
     3181 gcaaagaata gagagaaaga gaagcctttt aaagcttatg cagaaaagct tgctgctcta
     3241 gcaagttctc tccggcaagg cagacatcaa acagatggct ctaagctaga cctcttcaca
     3301 ctgaaactaa acctttgtgg cagataggcg gtggaaatat tcccactatg gtgcaataac
     3361 ctgtatttgt ttgcacctca ttctgtaaaa cataacctgt cctccaaaag caaacgcctc
     3421 tttttaaatc taaatgccta gaccaagaag catattcaca tggtaaaatt agaggattac
     3481 acagcagcca tgtttctaga ttaaagagtt cttggaggta tctcaaagca tttgctagga
     3541 gtgtgaacga gatagctcag cgagtaaagt gcttaccagg caaatctgac agcctggatt
     3601 tgatcccacg accccacagt gaaggagaga actgatttct gaaagttgtc ctctgacctc
     3661 cgcactcaca cataaacatt cacaagtaac ccacaaagaa taatattccc agtaggatac
     3721 aagacgctgt gtttgtttgt accttgtttt gtaaagcatt acctgtgccc caaataataa
     3781 atgaaattta aaatttaaa
//
