LOCUS       NM_001399789            5611 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus glucosaminyl (N-acetyl) transferase 4 (Gcnt4),
            mRNA.
ACCESSION   NM_001399789 XM_039103466
VERSION     NM_001399789.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5611)
  AUTHORS   Stone,E.L., Ismail,M.N., Lee,S.H., Luu,Y., Ramirez,K., Haslam,S.M.,
            Ho,S.B., Dell,A., Fukuda,M. and Marth,J.D.
  TITLE     Glycosyltransferase function in core 2-type protein O glycosylation
  JOURNAL   Mol Cell Biol 29 (13), 3770-3782 (2009)
   PUBMED   19349303
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jan 14, 2022 this sequence version replaced XM_039103466.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.8273.1,
                                           SRR26643288.8101.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-858               JAXUCZ010000002.1  29988048-29988905
            859-5611            JAXUCZ010000002.1  30012956-30017708
FEATURES             Location/Qualifiers
     source          1..5611
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q12"
     gene            1..5611
                     /gene="Gcnt4"
                     /gene_synonym="RGD1563891"
                     /note="glucosaminyl (N-acetyl) transferase 4"
                     /db_xref="GeneID:120100673"
                     /db_xref="RGD:1563891"
     exon            1..858
                     /gene="Gcnt4"
                     /gene_synonym="RGD1563891"
                     /inference="alignment:Splign:2.1.0"
     exon            859..5611
                     /gene="Gcnt4"
                     /gene_synonym="RGD1563891"
                     /inference="alignment:Splign:2.1.0"
     CDS             860..2263
                     /gene="Gcnt4"
                     /gene_synonym="RGD1563891"
                     /EC_number="2.4.1.102"
                     /note="glucosaminyl (N-acetyl) transferase 4, core 2"
                     /codon_start=1
                     /product="beta-1,3-galactosyl-O-glycosyl-glycoprotein
                     beta-1,6-N-acetylglucosaminyltransferase 4"
                     /protein_id="NP_001386718.1"
                     /db_xref="GeneID:120100673"
                     /db_xref="RGD:1563891"
                     /translation="MKILRCCFKYTLQQKVFILFLTLWLFSLLKLLNVGRLLFPQRDI
                     YLVEYSLSTSPFVRNRFPDTGDAARDAVNCSGVYEHEPLEIGKSLEIRRRNIIDLEDG
                     DVAVMTSDCDIYQTLRQYHEKPVSRVEEDFPIAYSLVVHKDAIMVERLIRAIYNQHNL
                     YCIHYDLKSPDAFKAAMNNLAKCFSNIFIASKLEAVEYAHISRLQADWNCLSDLLKSS
                     VQWKYVINLCGQDFPLKSNFELVTELKKLRGRNMLETVRPPTGKMERFTYHHELRQVP
                     YEYMKLPVKTNVSKGAPPHDIEVFVGSAYFVLSQAFVKYIFNSSLVKDFFAWSKDTYS
                     PDEHFWATLIRIPGIPGGISRSSQDVSDLQSKTRLVKWNYYEGFFYPNCTGSHLRSVC
                     IYGAAELRWLIKEGHWFANKFDSKVDPVLIKCLAEKLEEQQRKLIALSSEKSITEGNP
                     KATHKITTGLRASDTES"
ORIGIN      
        1 agagaagccg gtagccggac cggagagctg cgcgacctgc cggcgtgcgc gccacgaaac
       61 ttcggtcccc agcgaggtgc ggggaccccc tgcgggagca cggtggcgct ccccttcatt
      121 ctccggcgtc accggggggc ctcggcgctg tctcacttct ggccgggaaa gagcgacttc
      181 gggacagtgc gtgtggccgt ggagcctggg agcaccaggg tggcgcaacg gcggggacct
      241 ccggcccggg gctcccagtt ccccggtagg tccgcttagc cacgtaggca accgaggggc
      301 gctgggcggc cgcgtgcgac tcctctcctg cccgctactg tcgctttccc tcggtggaaa
      361 cttgaactcc gtgtctctgt agctatgggg cgggggcggc gcgatccgga actaattgga
      421 tctaggcttc ttagcggcgg agcccacggg tcccagggag gtggagagga cagcggggcg
      481 accgcagtga gcgcccggca gatgccgccg cttcgcagct ccacgcagta gccgagtcgt
      541 gagtgggatc ccgcgaagtt cccaggtccc gcgtgggagg cctccccggc ttcggctcca
      601 cgcgggattt ctccaaagag tgtcgaagac agaggttctg ggagaatcaa gtttcaggtc
      661 gcgtgtccca gctcgtggct tctgcaggga caagcttctt gcgttttaag gtcaagtttt
      721 cctgcggcag agcccgccag aaaccgtccc ccgcagtgaa gtggcggcgt ctcccctgaa
      781 gactgagaat ctctggggaa ccccagctta agggaaggga ccgcagagac cccttacgca
      841 cgtgggcgtg cctccaagaa tgaagatact cagatgttgc tttaaataca ctctccagca
      901 gaaagtcttc atcctcttct taaccctatg gctgttctcc ttgttaaagc ttctaaatgt
      961 gggcaggctc ctcttccctc agagggacat ttacttggtt gaatactccc tgagtacctc
     1021 accatttgta aggaacaggt tccccgacac cggggatgca gccagggatg cagtgaactg
     1081 ctcaggggtc tacgagcacg agccgttgga aatcggcaag agtctggaaa tcagaagacg
     1141 caatatcatc gacctggagg acggtgatgt cgcagtgatg acaagtgact gtgacatcta
     1201 tcagacccta agacagtacc acgaaaagcc cgtttcaaga gtggaggagg acttccccat
     1261 agcctattca ctggttgtcc acaaagatgc cattatggtt gaacggttaa tccgtgctat
     1321 ttacaaccag cacaaccttt actgtatcca ctatgacctg aagtcaccag acgcattcaa
     1381 agctgccatg aacaacttgg ctaagtgctt ctccaacatc ttcatcgcct ccaagttaga
     1441 ggccgtggag tatgcccaca tttccaggct ccaggctgac tggaattgct tatcagacct
     1501 tctcaagtcc tccgttcagt ggaagtacgt catcaaccta tgtgggcaag actttcccct
     1561 aaagtcaaat tttgaactag tgacagagct gaaaaaactc cgaggaagga atatgttaga
     1621 gacggtgcga cctcccacag gtaagatgga gaggttcacc tatcaccacg aactcagaca
     1681 ggtgccttat gagtacatga agctgccagt aaagaccaac gtctccaagg gggcaccccc
     1741 tcatgacatt gaggtctttg tgggcagtgc ctattttgtt ttaagtcaag catttgttaa
     1801 atatattttc aacagctccc tcgtcaaaga cttttttgcc tggtctaaag atacatactc
     1861 tcccgatgaa cacttttggg ccaccctaat ccggatacca ggaatcccgg gaggaatttc
     1921 cagatcgtcc caggatgtgt ctgacctgca gagtaagacc cgcctggtca aatggaatta
     1981 ctacgaaggc tttttctacc ccaattgcac tggctctcac cttcgaagtg tgtgcattta
     2041 cggagctgca gaattacggt ggctcataaa ggaagggcat tggtttgcta ataagtttga
     2101 ttctaaggta gaccctgtcc tgattaagtg tctggcagag aaacttgaag agcaacagag
     2161 aaagttgatt gctttgtctt cagagaagtc cattacagag ggaaacccca aagccacaca
     2221 taagatcact acaggcctga gggcgtctga tacagagagt taagcgagat ggaattacgc
     2281 acccccatgc cttgcccaac agcatctgaa cttaatagtt tccaaggttg aaacttctac
     2341 aggtttccat gcctggactt ctagcccacg gctggctggt gtttaagtgc tggatacgct
     2401 tgctgtcttt ctaagtcaga gctgttaact gtccagtgat agcacatctg ttgaacacct
     2461 aacagtgcac caggcacttt atcgaaagac acacaggaat taaatctaag atgcaatgac
     2521 gtgtgccctt gggaagcagc atttaccctt ctaatgtggc aactatcgtg ttttgagttt
     2581 cttcttgttt ccgtgtaatg agggtgctaa tcatacaagc cactccctca gaaaagcgtg
     2641 cgagtatgaa gccagccctc cccttttctc agttcagcaa ctgagatgtt tttgaattgt
     2701 tagaatatta ggaggaggga ttacactacc tcagagaagc tcaagggttg tcggatcacc
     2761 tgcttgccaa agtataattt acctttgggt gcctgcctca cttttctgat tcagggcaga
     2821 gggaatgtgg tcggtgtgat gtttgtaggg tatgattgtc tgagaaggca gagggggctg
     2881 gtgggtggac tggaccgagt aatgcctgaa gaggaccacc cagctgtaat cagcttcgca
     2941 ttccgaagag gaccacccag ctgtaatcag cttcgcattc cttacacagt ggtgccatga
     3001 acggctttcc ttttcattca cttgtttctt taaaacacag gtactgataa ggataaatag
     3061 ttcagagccc caggcctgtg tctgttattt cctaagataa cattatagat acaattgtat
     3121 ccttgccaca gtggaacact tctgacaggg ttcatagttc tgctctatgt aaccaccaag
     3181 tcagtaagct ttcttagaag agttattgtg aaatatgaca gctttctcag ttggttattg
     3241 tggtcactta cacgttttcc ttttttaaac aaaatggaat caaaattcaa aataattaac
     3301 actccgagtt agtgcatcat ttttctcaac tgagcaccaa aaggaatatt attaccctta
     3361 ttttacatat acccacactt agaatcgttt cgcatcccca cacacgtacg cacgcataaa
     3421 cacatgcaca cagatggggg aggggcacag cagactgaga ctgactgtat tgtgtattgt
     3481 gctgctgagc cagagccctg agaacaggct gcaacattac accagtctct gtggacacat
     3541 gtaaaacctc actgtgtttt gattcagccc ccaataacta cttaattatg tagtaatcaa
     3601 ggccaagatc agattatttg aaaggctaaa gtacgaaaat atcattttac atttccgcgc
     3661 tctgcatgtg ccgctctctt ggtgtattta ttgctttgta gcactgactg ccccgtggcc
     3721 ccatttttgc tccatttctt taactcacct tgcccctctt tgataccctt tggattcttt
     3781 tgttccctgg aaaggggctg gtaccaagtc tctgtcctta gatggtaagc tatagaggga
     3841 ctggagggtg gctcagcagt gaacacgtgc tgctcttatg gaggacccaa gttctgttcc
     3901 cagcacccat accaggtggc tcccagctgc ctgtaactcc agctgtaggg aatcagcgcc
     3961 accttctagc ctccagtggc acctacaccc atctgtgtat acacacgcac atgcacactc
     4021 acgcatacac atacctgcac acagatacat tacaagtatt tgaggagttt gagtctcaca
     4081 gagacactgc ccaggtctat cagtgggtga gacctaaaga aaccatctcc tcactctccg
     4141 tgggcgtctg ttctctgtgc actgagcaca tggatgcaag ttgtggtttc ctcagaagcg
     4201 tttacgagat tcagtgtcac atgaagcgga gagaaatttt gaaatctcag tttggtgaga
     4261 gtataaagta agcagaggtc ccaagtccgt cgtgagactt aaagacgagc actggaaaca
     4321 caacaagagg ccacagtcac aggggaagct ctgccaccag attccggtct gagaaaaagc
     4381 cctgtcatgg catttggagc ttcttccaca gccaacagcg tactggcatg ctggtcgaat
     4441 ggttatgtgg gaatgaggat taaagaaaca ttggtaacca tacagggtca aactcacgag
     4501 gtcttgcttt tttggttttt tttttttaac tatgacttca gccatcaaac agagggtaag
     4561 ggcggcatgc agttagcatc tacctgatct acctggtcct ctgtctttct ggagagaaag
     4621 gaccctgttc tctgttcttt agggattgtc tcaagttcgt gcatggtgcc atgctatttt
     4681 caagtggacg atgggcagac caagtggcat gcattccttc cccgcggaca cgttctccgg
     4741 actcagaaac gtcagctgct tgtatttggg ggagcttgcc aaagcactgg ctctcgtctt
     4801 gggaatcctg cgggttcctg cttagtcttc agaaatgatt ctggcaaaaa accgcttgct
     4861 atgagcccct ccccagtctc agaacgtaca acactgtttt ataattgttc tttgtatagt
     4921 atttattgaa ttaagactct aatttactta aaggtgagag tctataaatt atatgtgaat
     4981 attagaagga aaatgaaagc tgtcaaaata tattatgtga gcagtctact gtaccgtaga
     5041 cgctgtgtgt atcgaaaagc cagtactggt atttgttttg ttttattttg cttattttaa
     5101 atcaactcgt tgaaagttaa aacattttag ggctagaaag atgccttagc agttaagagc
     5161 actggccact cttccagagg attcaggttc aattcccaga gccctcgtgg cagctcacaa
     5221 gtatctgtaa ctccagtctg cggggatctg acatccttcc ttttctggca caggtacaca
     5281 ccttgtagac agacagacag acatgcaggc aaaacactca cacacagaaa attagttgaa
     5341 agttaaagct gtcccttggc ttccagaatg tgaacacaca cgggcttgcg tgtgtaatgt
     5401 agagtgggtg tagcaagtat attcacattg tttctgtcaa tggtgtcttc aggttttcct
     5461 tgtccctctc tatggctctt tcattgtgtc atcctcatcc cttaccattt cagtaacaaa
     5521 tttcccacat atggatttta aatagtgatt tattgtttaa attatgttag ttctctggca
     5581 tcgcaaaata aaatgtgctc ctcaaatcaa a
//
