LOCUS       NM_001134554            2583 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus GC-rich sequence DNA-binding factor 2 (Gcfc2),
            mRNA.
ACCESSION   NM_001134554 XM_001071756 XM_232102
VERSION     NM_001134554.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2583)
  AUTHORS   Yoshimoto,R., Okawa,K., Yoshida,M., Ohno,M. and Kataoka,N.
  TITLE     Identification of a novel component C2ORF3 in the lariat-intron
            complex: lack of C2ORF3 interferes with pre-mRNA splicing via
            intron turnover pathway
  JOURNAL   Genes Cells 19 (1), 78-87 (2014)
   PUBMED   24304693
REFERENCE   2  (bases 1 to 2583)
  AUTHORS   Reed,A.L., Yamazaki,H., Kaufman,J.D., Rubinstein,Y., Murphy,B. and
            Johnson,A.C.
  TITLE     Molecular cloning and characterization of a transcription regulator
            with homology to GC-binding factor
  JOURNAL   J Biol Chem 273 (34), 21594-21602 (1998)
   PUBMED   9705290
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473957.1.
            
            On or before Sep 4, 2008 this sequence version replaced
            XM_001071756.1, XM_232102.4.
FEATURES             Location/Qualifiers
     source          1..2583
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..2583
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /note="GC-rich sequence DNA-binding factor 2"
                     /db_xref="GeneID:312474"
                     /db_xref="RGD:1304792"
     exon            1..244
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
     CDS             4..2193
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /note="transcription factor 9 (binds GC-rich sequences)"
                     /codon_start=1
                     /product="intron Large complex component GCFC2"
                     /protein_id="NP_001128026.1"
                     /db_xref="GeneID:312474"
                     /db_xref="RGD:1304792"
                     /translation="MALRPQRTFRRRQVDSSDSDSDGTKEQSAEEPAESGRPSAGGRT
                     EGAERPRGARSARGRGRVWASSRRSPGAASRGDGGAVKIPDAAFIQAARRKRELARTP
                     GDYISLDVNHPSTTSESKRSNGEDSESDPDDHEKRILFTPKPQTLRQRMAEESSIRNE
                     DSSEESQEDESQDTWEQQQMRKAVRITEGQSIDLLHSSKSQTLKKFDSSISFAPVNLE
                     IIKKQLNSRLTLLQDSHRSHQREYEKYEQDIKSSKTAIEKLESGPDQALNYKFYKGMK
                     IYVENIIDCLNEKISSIVELESSMYTLLLKHSEALLKRRQDELKCESSYLQQLSRKDE
                     TLASGSLALDEKDQRILEEIEARRVQRRQARVLSGNCDHQEGTSSDEELSPAEMTNFH
                     KRQGDILQDCKKVFEDVHDDFCNVQNILLKFQQWREKFPDSYYEAFVGFCLPKLLSPL
                     IRVQLLDWNPLKMDSMGLDRMPWFTAITEFMESGMEDVGKEDGSDKKILSAVINKTVV
                     PRLTDFVEMIWDPLSTSQTRILTVHCRVAFEQFASETEVSKSKQDLLKSVAARMKKSI
                     EDDVFIPLYPKSSEEGKMSPHSKFQERQFWGALKLFGNILLWNGLLPDDILQNLGLGK
                     LLNRYLIIALTNAIPGPDVVKKCSQIAACLPDKWFENSAMRTSLPQLENFVQFLLQSA
                     RKLSTTEFRNELNGIILILVKVKALSQAESLTEEHRLEPLTAQTAGV"
     exon            245..469
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
     exon            470..567
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
     exon            568..683
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
     exon            684..870
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
     exon            871..994
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
     exon            995..1076
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
     exon            1077..1189
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
     exon            1190..1389
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
     exon            1390..1540
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
     exon            1541..1659
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
     exon            1660..1736
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
     exon            1737..1803
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
     exon            1804..1950
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
     exon            1951..2075
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
     exon            2076..2583
                     /gene="Gcfc2"
                     /gene_synonym="RGD1304792"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aacatggcac tcaggcctca gaggactttc aggcggcgcc aggtcgattc cagcgatagc
       61 gatagcgacg gcacgaagga gcagagtgct gaggagccag cggagtcagg caggccgtct
      121 gcaggcggcc gaacagaggg agcggagcgg ccgcgcgggg cccgcagcgc ccggggccga
      181 ggtcgtgtct gggcgagttc ccggcgcagc ccgggagctg cttcccgagg ggacggaggc
      241 gcagttaaga tccctgatgc agcttttatt caggcagccc gcagaaaacg tgagctggcc
      301 aggaccccgg gggactatat ttcactggat gtaaaccatc cctccaccac ttctgagagt
      361 aagagaagca atggcgagga ctcggagagc gatcctgatg accacgaaaa aagaatacta
      421 tttaccccaa agcctcaaac actccgacag agaatggctg aggaatcatc aatcaggaat
      481 gaagactcga gtgaagagag tcaggaagat gaaagccaag acacctggga gcagcagcag
      541 atgaggaaag ccgtcaggat cacagaggga caaagtatag accttctcca cagcagtaag
      601 tctcagacac tgaagaagtt tgatagttcc atttcatttg caccagtaaa cttggaaatt
      661 ataaagaaac agttaaatag tagattaaca ttactacagg attctcatcg ctcacaccag
      721 agagaatatg aaaaatatga acaagacatc aagagttcaa agacagctat tgagaagctt
      781 gagagtggac cagatcaagc cctaaactac aaattctaca aaggcatgaa aatttatgtg
      841 gaaaatataa ttgattgtct aaatgaaaag attagcagca ttgtggaact agagtcatcc
      901 atgtacacac tgcttttaaa acactcagaa gcacttttga aacgcaggca agatgagcta
      961 aaatgtgaat cctcatattt gcaacagtta tcacgcaaag atgagacatt ggcaagtgga
     1021 agcttggctc tggatgaaaa ggatcaacgg attttagaag agattgaagc tcgaagggtg
     1081 cagagaagac aggcaagggt gctgtcgggc aactgtgacc atcaggaggg gacatccagt
     1141 gatgaagagc tgtctcctgc agagatgact aacttccaca agcgccaagg tgacatttta
     1201 caggattgta agaaagtttt tgaagatgtg catgatgatt tttgtaacgt ccagaatatt
     1261 ttattgaaat ttcagcagtg gcgagaaaag tttcctgatt cctactacga agccttcgtt
     1321 ggtttctgct taccaaagct tttaagtccc ctgatacgag ttcagttgct tgattggaat
     1381 cctcttaaga tggactccat gggtctagac aggatgccct ggttcacagc cataacagag
     1441 tttatggaga gcggcatgga agatgtagga aaagaagatg gttccgataa aaaaatcttg
     1501 tctgctgtca tcaacaaaac agttgttccc cgcctcacag attttgtaga gatgatctgg
     1561 gatcccctgt caacctcgca gacaagaatt ttaacagtgc actgcagagt ggcttttgaa
     1621 cagtttgctt ctgaaactga agtcagtaaa agcaaacagg atttacttaa atctgttgct
     1681 gcaagaatga agaagtcaat agaagatgat gtttttattc ctctataccc aaagagctct
     1741 gaagaaggaa aaatgtcacc acactccaag ttccaagaaa gacagttctg gggagctcta
     1801 aagctcttcg gaaatattct tctttggaat ggacttctcc cagatgacat cttgcaaaat
     1861 ctgggactgg ggaagctgct gaatcgctac cttatcattg ctcttactaa cgccatccct
     1921 ggaccagatg ttgttaaaaa gtgcagccag atagcagcat gtctgccaga caaatggttt
     1981 gagaactctg ctatgaggac atcacttccc cagctagaaa acttcgttca gtttttgttg
     2041 cagtctgcac gcaaattatc cacaactgaa ttcaggaatg aactcaatgg aataattctt
     2101 atcctggtga aggtaaaggc tctgagtcaa gctgaatccc tcacagagga gcatcgcctg
     2161 gagcccctca cagcccagac ggcaggtgtg tgagcgtgct gtacagaggt ccatgatgag
     2221 agtggacagc gcctttcctg tatatagatg acgcctcctg tccgctgtgc ccaccgtggc
     2281 tgtgtggaaa gcttcctgct gctgtgtgtc tgagggaagt acatgcatga ggcggctggc
     2341 gctcagtgtg cttctctttt attctctctc agtctgagaa gatgatgagg aaatctgaca
     2401 cacagaagca tgccccgcgt caaaaccacc ttcaacagac tccaactgtt tacaaatcag
     2461 ctaatgaggg aaaaactttc tatctcttga tttcttttgt cttattcttt tgtggagact
     2521 gggtctcatt ctgaagtgta agaaattgct tattaatatt aaatggttaa tacattttta
     2581 tac
//
