LOCUS       XM_039103867            4923 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus guanylate binding protein 3 (Gbp3),
            mRNA.
ACCESSION   XM_039103867
VERSION     XM_039103867.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4923
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4923
                     /gene="Gbp3"
                     /note="guanylate binding protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 66
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:685116"
                     /db_xref="RGD:1597766"
     CDS             151..3918
                     /gene="Gbp3"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:2263..2265,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     Gbp3"
                     /protein_id="XP_038959795.1"
                     /db_xref="GeneID:685116"
                     /db_xref="RGD:1597766"
                     /translation="MALETCMPEPMCLIENVKGQLRANQKALEILSAITQPVVVIATV
                     GLYRTGKSYLMNKLAGRKTGFSLGSTVQSHTTGIWMWCVPHPRKADHTLVLLDTEGLG
                     DVEKGDNQNDCWIFALAILLSSTFVYNSMGAINQQAMDQLQYVTELTDRIRTTSSPHS
                     NGVEASAEFVSFFPDFVWTLRDVTVKLEKDGKMLTADEYLDNSLKPKQGTSEEDRNYN
                     LPRLCIRKFFPKKKCFVFYSPTEWKKLSELESLRDDELDSEFLQQAANFCSFIFSSSK
                     AKRLPGGIQVNGARLEKLVLTYISAISSGHLPCMENAVLALAKVENSAAIQKAITHYD
                     QQMCQKVQLPTDTLQELLDLHRTCEREAKDIFLRTSFKDEDHSFKKDLLAQLEKKWNG
                     INNENMNKSSTRCSELLRDIFGPLEEAVINGAYSQPGGYLLYVEKREELKKKYLQEPK
                     KGIQAEEILQEYLQSNAAVAEALLQRDQALTVKQKEIEVERAKAESAQATVRILEEVE
                     KKHAQMMKEKERCHQERVRQLTENMERERAQVVEEQERILNLKLQEQKRLIKEGLKEE
                     SLRLKNEIQLMEQRNREKEAESAEAAMKMLEDMYKMDQKKMAQKGESHQEHVKQLPEE
                     KKESPECQAVMAPGTMKAPMCLVENKNKQLFVNPRAIHILNNISQPVVVVAIVGMYRT
                     GKSYLMNCLAGQNNGFPLGCTVXSETKGIWMWCVPHPTKPSHTLILLDTEGLGDVEKG
                     DARNDAWIFALAVLLSSTFVYNSMSTINNDALEKLHYVTKLTELIRAKSSPRSDGIED
                     AREFVGFFPDFIWTVRDFTLELKLDGHCITEDQYLENALQLVPGQDPQTQTSNWPREC
                     IRQFFPRRKCFVFDWPVSDPQLLAKIESISESQLNPNFQKQLENFCSYIFSHATGKRL
                     GEGILVTGSRLGNLVQTYVDAINTGTVPCLENAVKTLAERENSTAVQKAAEHYSEQMA
                     QRVRLPTDTLQELLSVHSACEKEAIAVFMEHSFKDDQWKFQKKLVVTIEERKKVFMEQ
                     NESASLSHCQAELDKLSASLRESISHGTFSVPGGHSLYLEARKKVEQDYEQVPRKGVK
                     ASEVFQNFLKSQITVEESILQSDKALSDGQRAMAAELAKKEAAEKELELMRQQQEKKE
                     QEIEAQMRSFAENMTQLQKKMEMERENILRDQERVLDHKLKALKDLLLEGVEEKYEDL
                     RREIKLRDEEIKAMKHSSIQNILEIAGNILTEVLPVVCNMGMQILSSYIVG"
ORIGIN      
        1 ctttcatcca ctgcaaagct tactgggatt tccaatattc tttcagctgg gaaaattgag
       61 aaagccgccc agcactccag gaagaactaa cagagaaacg aagagactct cacctactca
      121 gagcactctg acaggagaca accctgaaaa atggctttgg agacctgtat gccagaacct
      181 atgtgcctca ttgagaatgt gaaaggacaa ctgagagcca atcagaaggc cctggagatc
      241 ctgtcggcca ttacacagcc tgtggtagtg atcgcaactg taggcctcta ccgcacaggc
      301 aaatcctacc tgatgaataa gctggctggg aggaaaacag gcttctctct gggctccact
      361 gtgcagtccc acaccacggg catctggatg tggtgtgtgc ctcatcccag gaaggcagac
      421 cacaccctag ttctgcttga cactgagggc ctgggagatg tggagaaagg cgacaaccag
      481 aatgactgct ggatctttgc cctggctatt cttctaagca gcacctttgt ctacaacagc
      541 atgggagcca tcaaccagca ggccatggac cagctgcaat atgtgacaga gctgacagat
      601 cggatcagaa caacatcctc tcctcatagc aatggagttg aggcttcagc tgagtttgtg
      661 agcttcttcc ctgactttgt gtggactctg agagacgtga ctgtaaagct ggaaaaagat
      721 ggaaaaatgc tcacagcaga tgagtacctg gacaattccc tgaagcccaa gcaaggtacc
      781 agtgaagaag atagaaacta caacctaccc cgactctgta ttcggaagtt cttccccaag
      841 aagaaatgct ttgtcttcta ctcacccaca gagtggaaga agctctctga gctggagagc
      901 ctgcgtgatg atgagttgga ttctgaattt ttgcaacagg cggccaactt ctgttctttc
      961 atcttcagct cttctaaggc taaaagactc ccaggaggca tccaggtcaa tggagctcga
     1021 ctagagaaac tggtactcac atacatcagt gccatcagca gtgggcatct gccctgcatg
     1081 gagaatgcag tcctggcctt ggcaaaagta gagaactcag cagcaataca aaaggccatc
     1141 acccactatg accagcagat gtgtcagaaa gtgcagctgc ccacggacac cctccaggag
     1201 ctgctggacc tgcacaggac ctgtgagaga gaggccaagg atatctttct taggacttcc
     1261 tttaaagatg aagaccattc atttaaaaaa gatttactgg ctcaactaga aaagaagtgg
     1321 aatggcatca ataatgagaa tatgaacaaa tcatcaactc gttgctcaga gttacttcgg
     1381 gacatctttg gacctctaga agaagcagtg ataaatggcg cttattctca gccaggagga
     1441 tatcttctct atgttgagaa gagagaagag ctgaagaaaa agtatcttca ggaacccaag
     1501 aaggggatac aggctgaaga gattctgcag gaataccttc agtccaatgc ggctgtggct
     1561 gaggcacttc tacaaagaga ccaggctctc acagtaaagc aaaaagagat cgaagtggaa
     1621 cgagcaaagg ctgaatctgc acaggctact gtaagaattt tggaggaagt ggaaaagaag
     1681 catgcacaga tgatgaagga gaaagagagg tgtcaccagg agcgagtgag gcagttgaca
     1741 gagaatatgg agagggagag agctcaggta gtggaggagc aagagaggat tctgaacctt
     1801 aaactgcagg aacagaaacg actgattaaa gaagggttga aagaagagag tttaaggctg
     1861 aagaatgaga ttcagcttat ggaacaaaga aacagggaaa aagaagctga atctgctgag
     1921 gctgccatga aaatgttaga ggatatgtac aagatggatc agaagaaaat ggcacagaaa
     1981 ggagagagtc atcaggaaca tgtgaagcaa ttacctgagg aaaagaaaga gtctcctgaa
     2041 tgccaggctg tcatggcacc aggaactatg aaggccccca tgtgtctggt agaaaataag
     2101 aacaagcagc tgtttgtgaa tccaagagcc attcatattc tcaacaatat ttctcagcct
     2161 gtggttgtgg tggccattgt agggatgtac cgcacaggaa aatcctacct gatgaactgc
     2221 ctggctggtc agaacaatgg cttccctctg ggatgcacag tttagtctga aaccaagggc
     2281 atctggatgt ggtgtgtgcc tcacccaaca aagccaagtc acaccctgat ccttctagac
     2341 actgagggtc ttggggatgt agaaaagggt gacgctagga atgacgcctg gatatttgct
     2401 ctggctgtgc ttctgagcag cacttttgtc tacaacagca tgagcaccat caacaatgat
     2461 gccctggaga agctgcatta tgtgacaaaa ctcacagagc tcatcagagc aaagtcctcc
     2521 ccaagatctg atgggataga agatgctaga gagtttgtgg gcttctttcc agactttatc
     2581 tggactgtac gggacttcac tctggagctg aagttggatg gtcactgcat cactgaagat
     2641 cagtacctgg agaatgcctt gcaactggtt ccagggcagg atccccaaac ccagacttcc
     2701 aactggccaa gggaatgcat cagacaattc tttcctaggc ggaagtgttt tgtcttcgac
     2761 tggccagtga gtgacccaca actcttagcc aagattgaga gtatatcaga aagccagctg
     2821 aaccctaatt tccagaagca attggagaac ttttgttctt atatcttcag tcatgcaact
     2881 ggcaagagac tcggagaggg gatcctggtc actgggagtc gactggggaa tctagtgcag
     2941 acctacgtgg atgcaatcaa cactgggaca gtaccttgct tggagaatgc agtaaaaaca
     3001 ttggcagagc gtgaaaactc cacagctgtc cagaaggcag ctgagcacta cagtgagcag
     3061 atggcccagc gagtgaggct ccccacagac acgctccagg agctgctaag tgtgcactca
     3121 gcctgtgaga aggaagccat tgctgtcttc atggagcact ccttcaagga tgaccagtgg
     3181 aagttccaga agaagcttgt ggtcaccatt gaggaaagga agaaagtttt catggaacag
     3241 aatgaatcag catctctcag tcactgccaa gctgaactgg acaagctctc agcatccctg
     3301 agggagagca tctcacatgg aactttctct gttcctgggg gccatagtct ctacctagag
     3361 gccaggaaga aggttgagca ggactatgaa caagtgccca ggaagggagt gaaggcaagt
     3421 gaggtcttcc agaacttcct gaagtcacag atcactgtgg aagaatccat cttgcagtca
     3481 gacaaagctc tcagtgatgg acagagagct atggcagctg aactggccaa gaaggaggca
     3541 gctgaaaagg aactggagtt aatgaggcag caacaggaga agaaagagca agagattgag
     3601 gctcaaatga gaagcttcgc agaaaacatg acccagctgc agaagaagat ggagatggaa
     3661 agggagaaca ttctgagaga tcaggagagg gttctggacc acaagctaaa ggctctaaaa
     3721 gacctacttc ttgaaggagt tgaggagaaa tatgaagatt taagaagaga aataaagctg
     3781 agagatgaag agattaaagc catgaaacac agttcaattc agaatatcct tgagatcgct
     3841 ggcaatatac taactgaagt acttcctgtg gtatgcaata tggggatgca gattcttagc
     3901 tcatatatag taggatagga catccagtaa agtatagtaa gaaggcttca tatgtggttg
     3961 taatactgtt ataggcacct ttgcagtgtc tctgttctca tggattcatt gaactgcagt
     4021 tttaaattat agaattgtca aataatgtca gacaccaaca actcttgcac aaaaaaaatt
     4081 gaaaagcaac taaggtttaa ttaaataagt agaaattact catgaaaatt atttaactga
     4141 ggcatagatg caaatggtcc acccataaat ttccaccatc attattgcct atatatgagc
     4201 tgaaccaata caacaagaaa caagacaaag tagacaggaa aaaatcccat gagacctcta
     4261 ccttacaaaa agaactacag gtggctatgg ggcactgaga tcaagagaaa tagtattctc
     4321 caaggaatga cacaccagtt ggttatctag taccaaacgg tcagtgttgt gagctatgcc
     4381 cttaaaaccc tccattattg atataatatt atagttagag ttaagtatga ctgagttcat
     4441 taagaggtca aggatgatga aaaatcctca ggcagctgca gaaggctaat acaaatctgg
     4501 tggtcagatg tctaatgata tgacaaactt gtgacctttc tgaaaaatac atctggtggt
     4561 aggttgccta atgatatgac aaacttgtga cttttctgac atcctgttga catcagctga
     4621 ttgcctaacc acaagaacaa tgtgtccgtg gcctgtgtaa atgtttccca gttcacccct
     4681 ccctctgtta cccctgttat ggtataaatt cagctttggg aaaaaataaa atttgttgcc
     4741 ttgatcagac tcttttcttg gcatcctttt ttgtctcttg tcctccattc tttcctaggt
     4801 ggtccccaac ctcctctgac tgctctgcag gccagagcaa tctggcaccc agacatgtgg
     4861 ctttaggggt tgcaaaggaa agaacactgc tcactaggga aggataggtc tatacattta
     4921 tca
//
