LOCUS       XM_039103866            3419 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus guanylate binding protein 1 (Gbp1),
            transcript variant X2, mRNA.
ACCESSION   XM_039103866
VERSION     XM_039103866.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103866.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3419
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3419
                     /gene="Gbp1"
                     /note="guanylate binding protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 31 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 8 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:304266"
                     /db_xref="RGD:1311877"
     CDS             303..2645
                     /gene="Gbp1"
                     /codon_start=1
                     /product="guanylate-binding protein 1"
                     /protein_id="XP_038959794.1"
                     /db_xref="GeneID:304266"
                     /db_xref="RGD:1311877"
                     /translation="MDMTLQIHMPGPVCLIENVKGQLRANQKALEILSAITQPVVVVA
                     IVGLYRTGKSYLMNKLAGKKTGFSLGSTVQAHTKGIWMWCVPHPNKANHMLVLLDTEG
                     LGDVEKGDNQNDCWIFSLAILLSSTFVYNSMGAINQQAMDQLHYVTELTDRIRARSSP
                     DQDDGVEDSAEFVSFFPDFVWTLRDMTLKMEVDGLQVTADEYLEISLKLKEGSSKEVE
                     KYNLPRLCIRKFFPKKKCFVFYPPTEWKRLSQLETLQENEIDSEFLQQVAEFCLYVFK
                     ECKAKTLPGGIIVNGPRLETLVLTYLSAISSGDLPCMENAVLTLAQIENSAAVEKAIT
                     HYDQQMSQRVQLPTETLQELLDLHRTCEREAIEIFLRVSFKDEDHSFQMKLGSRLEER
                     WNDFCKRNMEVSSNRCWALLQDIFRPLEESVKQGTYSKPGGYYLFVQETQRLKEKYQG
                     QPKKGLQADEVLQKYLQSKEAITTAILQTDQSLTEKEKEIEVERKKAESAQAAAKLLE
                     ETQKKNEKLMEQKERSYQEHMKQLTEKMENDRIQLKAEQERILSLKLQEQKQLLQEGF
                     REESRKLQEEMKNVEKRYKETMDHMKAESSKTKEEMQRKYEQMLEKDRNHQEHTLHMI
                     EKMERDRAQLVAEQEKTMTLILQERELQLRNELAEERRKHEKEIQDIVAENRQIILKL
                     ESERAESAENTIKMLTELNELNLKTLGQKQKTLEDHLIQLTEQRDKDTASLMAEQGKI
                     FDSKLQEQEENFNKKIRAQSQQHREEIWKIKKEGFSCSLM"
ORIGIN      
        1 tcctttttct tcttcttccg cttcttcatc ttcttcttct tccttacttg ttctctccac
       61 ccccaaatct ctctcatgat ctagtttggt ctactgcttt ctctctctgc tctgtaatct
      121 tccagatgcc catcatatct caacaaaacc ttcctctaaa taatttcttg tagtagtcat
      181 gttctcactt tgtaaatgtg atgtcaatcc cactccctgg gacataaatt aacccttttc
      241 aatgggccca acctcttaat caaaccaagc tgctaatacg acatgtaagg caagaaacca
      301 taatggacat gaccctacag atccacatgc ctgggcccgt gtgcctcatt gagaatgtga
      361 aaggacaatt gagagccaat cagaaggccc tggagatcct gtcagccatt acacagcctg
      421 tggtggtggt ggcaatagtg ggcctctacc gtacaggcaa atcctacctg atgaacaagc
      481 tggctggaaa gaaaactgga ttctctctgg gatccactgt gcaggctcat acaaaaggaa
      541 tctggatgtg gtgtgtgcct caccccaaca aggcaaacca catgcttgtt ctgcttgaca
      601 ctgagggcct gggtgatgtg gagaaaggtg acaaccagaa tgactgctgg atcttttccc
      661 tggctattct tctaagcagc acctttgtgt acaacagcat gggagccatc aaccagcagg
      721 ccatggacca gctgcactat gtgacagagc tcacagatcg gatccgagca agatcctcac
      781 ctgaccagga tgatggggta gaagactcag ctgagtttgt cagcttcttc cccgactttg
      841 tgtggactct gagggatatg accttgaaaa tggaagtgga tggactccag gtcacagcag
      901 atgagtacct ggagatttct ctgaagctca aggaaggttc cagcaaggaa gttgaaaaat
      961 acaacctacc ccgactctgt attcgtaagt ttttcccaaa gaagaaatgt tttgtcttct
     1021 acccacccac tgagtggaaa aggctttctc agctggagac actgcaagaa aatgagatcg
     1081 attctgagtt tttgcagcaa gtagcagaat tctgtttata tgtctttaag gagtgcaaag
     1141 ccaaaaccct tccaggaggc atcattgtca atggcccacg actagaaacc ctggtgctga
     1201 cctatctgag tgccatcagc agcggagatc tcccctgcat ggagaacgcg gtcctgactt
     1261 tggcccagat agagaactca gcagcagtgg aaaaggccat cacccactat gaccaacaga
     1321 tgagccagag ggtacagctg cccacagaga ccctccagga gctgctggac ctgcacagga
     1381 cctgtgagag agaggccata gaaatcttcc tcagggtctc ctttaaagat gaagatcatt
     1441 catttcaaat gaaattaggg tctcggctag aagaaaggtg gaacgacttc tgtaaacgca
     1501 atatggaagt gtcatctaac cgttgctggg ctttgcttca agatatcttc agacctcttg
     1561 aagaaagtgt gaagcaaggc acttattcta agccaggagg ttattacctc tttgttcagg
     1621 aaacacagag gctgaaggaa aagtaccaag gacaaccaaa gaagggctta caggctgatg
     1681 aggttctgca gaaatattta caatccaagg aggctattac tactgcaatt ttacagacag
     1741 atcagagtct gacagaaaag gaaaaggaga ttgaagtgga acggaagaaa gctgaatctg
     1801 cacaggctgc tgcaaagctg ttggaggaaa cacagaagaa aaatgagaag ctgatggagc
     1861 agaaagaaag aagttatcag gagcacatga aacagttgac tgagaaaatg gagaatgaca
     1921 gaatccaatt aaaagcagag caagagcgga tattatctct aaaacttcag gagcagaagc
     1981 agctacttca ggaggggttc cgagaagaaa gcagaaagct tcaagaagag atgaagaatg
     2041 tggagaagag atacaaagaa acaatggatc atatgaaagc tgaatcttca aagactaaag
     2101 aagaaatgca aaggaagtat gagcagatgt tggaaaaaga caggaatcac caggaacata
     2161 cactacatat gatagaaaag atggagaggg acagagcaca gttagtagca gagcaagaga
     2221 agacaatgac tcttatcctt caggagagag aactacagct caggaatgaa cttgctgaag
     2281 agagaagaaa gcacgagaaa gagattcagg atatagtggc tgaaaacaga caaataatct
     2341 tgaaattgga atctgaacga gctgagtctg cagagaacac aataaaaatg ttgacggaat
     2401 tgaatgagtt gaatctgaag actttaggcc agaaacaaaa aactcttgag gatcatttga
     2461 tacaattgac tgagcagaga gacaaggata cagcaagtct aatggcagaa caagggaaga
     2521 tcttcgatag taagcttcag gaacaagaag aaaatttcaa taaaaaaatc cgggctcaga
     2581 gtcaacaaca tcgggaagaa atttggaaaa tcaagaaaga gggttttagt tgttccttga
     2641 tgtgaaaagt ctaaccagag cagcttgcac ccctgctctc tcctttcagg aaggaatttt
     2701 tctgacatac tttgggccat ctcaaattca aaactaaata caattcaaaa taataaagat
     2761 gtcaaagcct aagagcatgt ggtcttgtag aattaagtgt aagagtaggg tgccctggga
     2821 catatcgata gatccatagg aagtgatttc aaactttgat attacagtac tgaggataca
     2881 catgccataa ttattgatgt ggccaagctt ctagcttgct cccagcttcg attgaatctg
     2941 caaataaaag agacacaacc atttgttcct tttcaacttg cctttttagt ccaattgctg
     3001 ggagctactg tctcccacct ggaaaacatg gccttatcaa tacttttagc tctcatctcc
     3061 ctcctttagt ccatcagttg aaatttgtcc ttgctaaaca cctctgacca cccatctata
     3121 ggagtggcta cggcccacca ctcctcccaa gaccttacat ggttgcttgg ttctcctctc
     3181 cccaaggcat ggcaaactcc cctctctcct tccttgcaac ttcactttcc tccagggact
     3241 tgaaagttct gccttcacct tctgcctagc aattggccca tgtctttctg tactaacaga
     3301 tcaaaagcca attggagaac aggacttcag catcggaagt acaataagct ttggtgtgat
     3361 tcactggggg aaatacaaac aatatgtaca aaaataaaac tatattgagt gtctactaa
//
