LOCUS       XM_008761694            1318 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus globoside
            alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)
            (Gbgt1), mRNA.
ACCESSION   XM_008761694
VERSION     XM_008761694.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008761694.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008761694.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 3 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-47                JACYVU010000115.1  5282952-5282998
            48-83               JACYVU010000115.1  5283078-5283113
            84-215              JACYVU010000115.1  5283817-5283948
            216-339             JACYVU010000115.1  5285466-5285589
            340-340             "N"                1-1
            341-447             JACYVU010000115.1  5285590-5285696
            448-448             "N"                1-1
            449-1318            JACYVU010000115.1  5285697-5286566
FEATURES             Location/Qualifiers
     source          1..1318
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1318
                     /gene="Gbgt1"
                     /note="globoside
                     alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood
                     group); The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 4 Proteins, and 51% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:499764"
                     /db_xref="RGD:1591938"
     CDS             1..759
                     /gene="Gbgt1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     substituted 3 bases at 3 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:22..24,aa:OTHER)
                     /transl_except=(pos:403..405,aa:OTHER)
                     /transl_except=(pos:562..564,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: globoside
                     alpha-1,3-N-acetylgalactosaminyltransferase 1"
                     /protein_id="XP_008759916.2"
                     /db_xref="GeneID:499764"
                     /db_xref="RGD:1591938"
                     /translation="MKLPFRRXELFQPVAQLQYPQPKVSVREPTELLTLTPWLAPIVS
                     TETFNPELLKNMYQPLYLTRVTMFAVGKYTCFIQSFPKSAEEFFMRGYQVHYYLFTHD
                     PAAVPRVPLGPXWLLSIIPIQGPSQWEEISMCXMETINKHIDKRAHKXDYLFCVDVDM
                     VFRNRWGPETLRDLVAAIRPGYFAVPHXQLPYERRQVPSAFVADSEGDFYYGGAVFGR
                     RVAKVYEYLWDDRKTQPPNLKTSDSPQWGGIPTD"
ORIGIN      
        1 atgaagctgc ccttcaggcg gtaggaactg ttccagcctg tggcccagtt acagtaccct
       61 cagcctaagg taagtgtcag ggaacccaca gagctgctga cacttacccc ctggttggca
      121 cccatcgtct ccacggaaac cttcaaccca gagcttctga agaatatgta tcaaccactg
      181 tacctgacca gagtcaccat gtttgccgta gggaagtaca cctgcttcat tcagtccttc
      241 ccgaagtcag ctgaagagtt ctttatgcgt gggtaccaag tgcactatta cctctttacc
      301 catgatcctg cagctgttcc cagagttccc ctgggcccan gttggctcct cagcatcatc
      361 cccatccagg gtccctccca gtgggaggag atttctatgt gctgaatgga gaccatcaac
      421 aaacacattg acaagagggc ccacaagntg gattacctct tctgtgtcga tgtggatatg
      481 gtcttccgta accgatgggg ccctgagacc ttgagggatc tggtggctgc cattcgccca
      541 gggtattttg ctgtacctca ctagcaactc ccttatgaac gcaggcaagt tccctctgcc
      601 tttgtggcag acagcgaggg ggacttctat tatggtgggg cagtctttgg gagacgagtg
      661 gccaaggtgt atgagtacct ctgggatgac aggaagactc agccaccaaa cctgaagaca
      721 tccgattctc ctcagtgggg agggatacca actgactgag gaactaacaa accaagctaa
      781 gacccgccca gagccctgtt ggatcccacc ccaagccaag cccagtctac cccttgcata
      841 cctcggtata ccaggagagt ccaaccagga aaatggatat agagacggtg tgaactgtga
      901 ggggttgtgt acccacagcg gtccagcaca tgattggttg gacaagaggg aggcatcacg
      961 aaacacaggg cctgtcaggc ctccccacac ctacccaagg gatggatgtg ccttctctcg
     1021 gcaggctggg gaatccagct ctgatcaagg tacctggggg ccactacctt cccttgttag
     1081 ttaaatactg atttttagtt tcgttttaat ctgcgacagt ggggatcaaa cctgcggcag
     1141 gcacatggaa gggaaatgcc ctgcctttga gccatcctca cccccacatg ttaaagacct
     1201 tttcccaagt acaatgctgc accccagcca caggcagctg ctctttactc tggattcctg
     1261 agctacctct gaagcagacc aggcttagct tctctggtcc cctgcatccc atggtgag
//
