LOCUS       NM_001271233            6155 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus granule associated Rac and RHOG effector 1
            (Garre1), mRNA.
ACCESSION   NM_001271233 XM_003748833 XM_003748834 XM_003753239
VERSION     NM_001271233.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6155)
  AUTHORS   Bagci,H., Sriskandarajah,N., Robert,A., Boulais,J., Elkholi,I.E.,
            Tran,V., Lin,Z.Y., Thibault,M.P., Dube,N., Faubert,D.,
            Hipfner,D.R., Gingras,A.C. and Cote,J.F.
  TITLE     Mapping the proximity interaction network of the Rho-family GTPases
            reveals signalling pathways and regulatory mechanisms
  JOURNAL   Nat Cell Biol 22 (1), 120-134 (2020)
   PUBMED   31871319
  REMARK    Erratum:[Nat Cell Biol. 2020 Mar;22(3):353. PMID: 32042180]
REFERENCE   2  (bases 1 to 6155)
  AUTHORS   Youn,J.Y., Dunham,W.H., Hong,S.J., Knight,J.D.R., Bashkurov,M.,
            Chen,G.I., Bagci,H., Rathod,B., MacLeod,G., Eng,S.W.M., Angers,S.,
            Morris,Q., Fabian,M., Cote,J.F. and Gingras,A.C.
  TITLE     High-Density Proximity Mapping Reveals the Subcellular Organization
            of mRNA-Associated Granules and Bodies
  JOURNAL   Mol Cell 69 (3), 517-532 (2018)
   PUBMED   29395067
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Sep 9, 2012 this sequence version replaced
            XM_003748833.1, XM_003748834.1, XM_003753239.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.274064.1,
                                           SRR26360172.1157600.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1228              JAXUCZ010000001.1  96050393-96051620   c
            1229-1429           JAXUCZ010000001.1  96028475-96028675   c
            1430-1570           JAXUCZ010000001.1  96022748-96022888   c
            1571-1666           JAXUCZ010000001.1  96022353-96022448   c
            1667-1828           JAXUCZ010000001.1  96022067-96022228   c
            1829-1987           JAXUCZ010000001.1  96020994-96021152   c
            1988-2085           JAXUCZ010000001.1  96018657-96018754   c
            2086-2211           JAXUCZ010000001.1  96009553-96009678   c
            2212-3224           JAXUCZ010000001.1  96006630-96007642   c
            3225-3390           JAXUCZ010000001.1  96004562-96004727   c
            3391-3528           JAXUCZ010000001.1  96003110-96003247   c
            3529-3607           JAXUCZ010000001.1  96002368-96002446   c
            3608-6155           JAXUCZ010000001.1  95999305-96001852   c
FEATURES             Location/Qualifiers
     source          1..6155
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..6155
                     /gene="Garre1"
                     /gene_synonym="RGD1308428"
                     /note="granule associated Rac and RHOG effector 1"
                     /db_xref="GeneID:308509"
                     /db_xref="RGD:1308428"
     exon            1..1228
                     /gene="Garre1"
                     /gene_synonym="RGD1308428"
                     /inference="alignment:Splign:2.1.0"
     CDS             734..3916
                     /gene="Garre1"
                     /gene_synonym="RGD1308428"
                     /codon_start=1
                     /product="granule associated Rac and RHOG effector protein
                     1"
                     /protein_id="NP_001258162.1"
                     /db_xref="GeneID:308509"
                     /db_xref="RGD:1308428"
                     /translation="MYCCSAQDSKMDYKRRFLLGGSKQKVQQHQQYPMPELGRALSAP
                     LASTAPSAPLGSLTTAGSCHHAMPHSTPIADIQQGISKYLDALNVFCRASTFLTDLFS
                     TVFRNSHYSKAAMQLKDVQEHVMEAASRLTSAIKPEIAKMLMELSAGAANFTDQKEFS
                     LQDIEVLGRCFLTVVQVHFQFLTHALQKVQPVAHSCFAEVVVPEKKNSSSLSGMGHTP
                     ELEEAVRSWRGAAEATSRLRERGCDGRLAGIEVQQLFCSQSAAIPEHQLKELNLKIDS
                     ALQAYKIALESLGHCEYAMKAGFHLNPKAIEASLQGCCSEAEAQQTGRRQTPPQPMQC
                     ELPTVPVQIGSHFLKGVSFNESAADNLKLKTHTMFQLIKEAGCYDGITPRDDLPVTEV
                     LNQVCPSTWRGACKTAVQLLFGQAGLVVVDTAQIENKEAYAPQISLEGSRIVVQVPST
                     WCLKEDPATMSLLQRSLDPEKTLGLVDVLYTAVLDLNRWRTGREQALPCIQIQLQRDI
                     CDFGNQADLPSGNGSKSSGLQKTFSKLTSRFTKKVSCTNSGSTHYSKTIFTAGCSEEK
                     AKMLGSNIDTRLQSILNIGNFPRTTDPSQSSQNSRNPMVNGFLLERRENFLHGDDGKD
                     EKGMNLPTDQEMQEVIDFLSGFNMGQSHQGSPLVTRRNSTATAMVTEQKTGTMQPQQP
                     SLPLAPPLRPPQAGAHTPLAAQQGLAPQQQSPKQQQPQVQFYQHLLQPIGSQQTPPQS
                     RAPGKWGHGSSQHPSQPMAAGLSPLGQWPGISDLSSDLYSLGLVSSYMDNMMSEVLGQ
                     KPQGPRNNTWPNRDQSDGVFGMLGEILPFDPAVGSDPEFARYVAGVSQAMQQKRQAQH
                     GRRPGNPRGNWPPMDDAHRTWPLPEFFTEGDSLHSGWSGAQGDSASSSDETSSANGDS
                     LFSMFSGPDLVAAVKQRRKHSSGEQETSTLPSPPLLTTVEDVNQDNKTKTWPPKAPWQ
                     HPSPLPSTLPSPAAPLYAVASPGSQWNDTMQMLQSPVWAAASDCNTTSFTYVQTPPQP
                     PPPPAHKAAPKGFKAFPGKAERRPAYLPQY"
     exon            1229..1429
                     /gene="Garre1"
                     /gene_synonym="RGD1308428"
                     /inference="alignment:Splign:2.1.0"
     exon            1430..1570
                     /gene="Garre1"
                     /gene_synonym="RGD1308428"
                     /inference="alignment:Splign:2.1.0"
     exon            1571..1666
                     /gene="Garre1"
                     /gene_synonym="RGD1308428"
                     /inference="alignment:Splign:2.1.0"
     exon            1667..1828
                     /gene="Garre1"
                     /gene_synonym="RGD1308428"
                     /inference="alignment:Splign:2.1.0"
     exon            1829..1987
                     /gene="Garre1"
                     /gene_synonym="RGD1308428"
                     /inference="alignment:Splign:2.1.0"
     exon            1988..2085
                     /gene="Garre1"
                     /gene_synonym="RGD1308428"
                     /inference="alignment:Splign:2.1.0"
     exon            2086..2211
                     /gene="Garre1"
                     /gene_synonym="RGD1308428"
                     /inference="alignment:Splign:2.1.0"
     exon            2212..3224
                     /gene="Garre1"
                     /gene_synonym="RGD1308428"
                     /inference="alignment:Splign:2.1.0"
     exon            3225..3390
                     /gene="Garre1"
                     /gene_synonym="RGD1308428"
                     /inference="alignment:Splign:2.1.0"
     exon            3391..3528
                     /gene="Garre1"
                     /gene_synonym="RGD1308428"
                     /inference="alignment:Splign:2.1.0"
     exon            3529..3607
                     /gene="Garre1"
                     /gene_synonym="RGD1308428"
                     /inference="alignment:Splign:2.1.0"
     exon            3608..6155
                     /gene="Garre1"
                     /gene_synonym="RGD1308428"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttatgaatac atctgtgctt tcttgcttca gactttacaa ctgcaggcca acccagtctg
       61 gaagcacttt ttattaatgt tacaaggaaa ccgctacctc agcaaacaaa agaaaagaga
      121 agacacacag taacaaatgc catgtttaaa gaacacttgt tcccagaaac cttgcaggag
      181 atttggaagt ttttagcact gagaagaagc tttccaggta aatggatttg acaggcaggc
      241 tctgtcagaa ttctgcagag gtgtgttctt ccttaaggac ttcccgtgaa gtaacccctt
      301 ccgcctaaat gctgttgacc agctggggtc ctttttggta tataaaagat acattatatt
      361 acattttaaa agttaagtta tttttctgcc attgtaaatg taagtatcaa aatattcttg
      421 caaagcaatt ataaataaac attttcctca gcaagcatat cttcatcgag ggtaggatgc
      481 tgaacagtta cagagcattt tggacactgt tattttttgt tagagttcct acccacactg
      541 aaaatattaa ttatataaat ctgttatttt tctcaccttt atgttggatc acatggtcac
      601 ctgcctcatg gaaataactt ttttaaaact tagatttgca gaactccact atttttatac
      661 ctagccacag ttttggaaaa aaggactcag agcgctgacc tgccagtggt ccctgggaca
      721 gtttcccacc cgcatgtatt gctgcagtgc ccaggacagt aagatggact acaagcggcg
      781 cttcctgctt ggcgggtcca agcagaaggt gcagcagcac cagcagtacc cgatgcctga
      841 gctaggccga gcactgagtg cgcctttggc gtccacggcc ccctctgctc cgctgggcag
      901 tctgaccact gcaggcagct gccaccatgc catgccccac tctactccca ttgctgacat
      961 ccagcagggc atctctaagt acctggatgc cctcaatgtc ttttgccgtg ctagtacgtt
     1021 cctcacagat ctcttcagca ccgtgttcag gaactcacac tactcaaagg ctgctatgca
     1081 gctcaaagac gtgcaggagc atgtaatgga agcagccagc aggttgacct cagccataaa
     1141 gcccgagatt gccaagatgc tcatggaact cagtgctggg gctgcaaact tcacagatca
     1201 gaaggaattc agtctccagg acattgaggt gttggggcga tgtttcttga cagtggtgca
     1261 agtccatttc cagtttttga ctcacgcctt acagaaagtc cagccagtgg ctcactcttg
     1321 ctttgcagag gtagttgtgc cagaaaaaaa gaacagcagt agtctgtctg gcatgggcca
     1381 cacacccgaa ctggaggaag ctgtgcgatc ctggcgaggg gctgctgagg cgacatctag
     1441 attaagagag agaggctgcg atggacgact ggcgggaata gaagtccaac aactcttttg
     1501 ttctcaaagt gcagcaattc ctgagcacca gctaaaagag ctaaacttaa aaattgacag
     1561 tgctttgcag gcatataaaa tagctttgga aagcttaggc cactgtgaat atgcaatgaa
     1621 agctggcttc cacctaaacc caaaggccat tgaagcaagt ttgcagggct gctgtagtga
     1681 ggcggaagct cagcagacgg ggcgaaggca gacaccccca cagcctatgc agtgtgagct
     1741 ccccacggtc cctgtgcaaa taggatcaca tttcctgaag ggggtctcct ttaatgagtc
     1801 ggctgctgac aatctgaagc ttaagacgca taccatgttc cagctcatca aggaagcggg
     1861 ctgctacgat ggaatcacac ctagggacga ccttcctgtg actgaagtcc tgaatcaggt
     1921 gtgcccgtcc acgtggcggg gcgcctgtaa gactgccgtg cagctgctgt ttggccaggc
     1981 tgggctggta gttgttgaca cagcacagat tgaaaataaa gaagcctatg caccccagat
     2041 cagtcttgaa ggctccagaa ttgtggttca agtcccatcc acatggtgcc tgaaggaaga
     2101 ccctgccacc atgtccctgt tgcagagaag cctggatcct gagaagaccc tcggtctggt
     2161 ggatgtactc tatacagccg tgctggacct aaaccgctgg agaacaggga gggaacaggc
     2221 tttaccctgt atacagatcc agctgcaaag ggatatctgt gattttggga atcaggctga
     2281 cctgccatct ggaaatggaa gcaaatcctc aggcctgcag aagactttct ccaaactgac
     2341 atcccggttc acaaagaaag tgtcatgcac caactccggc agcacacact attccaaaac
     2401 catcttcaca gctggttgtt cagaggagaa ggccaaaatg ctcggcagta acattgatac
     2461 acggttacag agcattttga acattggtaa ctttcctagg actacagacc cttcacagtc
     2521 atctcagaac tccaggaatc caatggtcaa tggctttctc ctggagagac gtgagaactt
     2581 cctgcatggg gacgatggca aggatgagaa gggcatgaac ttacccactg atcaggaaat
     2641 gcaggaagtg atagattttc tctcaggctt taacatgggc cagtcccatc aggggtcccc
     2701 actggtgaca aggcgcaact ctactgccac tgccatggtg actgagcaga agacaggaac
     2761 catgcaacca cagcagccat cactgccgtt ggcccctcca ctacggccac cccaggctgg
     2821 agcacacacg cctctggcag cccagcaagg tctggctcct cagcagcagt ccccaaagca
     2881 gcagcagccc caagtccagt tctaccagca cctgctgcaa cccattggat cacagcagac
     2941 gccaccccag tcccgggcgc ctggtaaatg gggacatggc tcatctcagc acccatcaca
     3001 gcccatggca gcgggtctgt ctcctcttgg tcagtggcct ggcatatctg atctcagctc
     3061 tgacttgtac agcttgggtc tagtgagcag ctatatggac aatatgatgt cagaagtttt
     3121 gggacagaag ccacagggac ctaggaataa cacctggcca aatcgtgacc aaagtgatgg
     3181 agtctttgga atgctgggag agattttgcc ttttgatcct gcagtgggct cagacccaga
     3241 gttcgcacgc tacgtggcag gagtgagcca ggcaatgcag cagaagcggc aagcccaaca
     3301 tggccgccgg ccaggcaacc cccggggcaa ctggccgccc atggatgatg ctcatcggac
     3361 ctggcctttg ccagagttct ttacagaagg ggacagcctg cacagtggct ggtcaggtgc
     3421 tcagggagac tcggccagct ccagtgatga gacctcttca gccaatgggg acagcctgtt
     3481 ttccatgttt tcagggcctg accttgttgc tgctgtcaaa cagagaagga aacacagcag
     3541 tggagagcag gagaccagca cactgccctc accacctctc ctgaccacag tggaggatgt
     3601 gaaccaggat aacaaaacca aaacgtggcc acccaaagca ccatggcagc acccttcccc
     3661 gctgcccagc acgctgccca gcccagctgc accactctat gcagttgcca gtcctggcag
     3721 ccagtggaat gacaccatgc agatgctgca gtcccctgtg tgggctgcag ccagtgactg
     3781 caataccacc tccttcacct atgttcagac accaccacag cccccacctc caccagcaca
     3841 taaggcagca cccaagggct tcaaggcctt ccctgggaag gctgaacgga ggccagccta
     3901 tttgccccag tactgaccac agctagcctg ctgcccatca aagctttggg gcaactgtcc
     3961 ccagggctaa ctagctgata ctagccccca gaaggaccag tgcaccctgc cccagggaca
     4021 gaaataatcc ttgggtcaga agtgattggc agctccaagt ctttgaggcc tgctttctca
     4081 aactttgaag gtagcagacc cctgggaggc agctgaagat ggagatttct gacactcagg
     4141 ggatgctggc agtctatatt tgtttaataa gcacctcaga taatcctggt gcgggtggcc
     4201 aaaggccaca cttgggaaaa cacagtctga aggttgtcag tcctgcatgt gggaaaggca
     4261 tgaggcctgc aggctgagaa caaaactgac cattctttga agctctctcc tctttaacat
     4321 actgagtggg acccacaccc atcactgatt ttatagatat ttctcatgta ggctttcact
     4381 taaaaacgtc tcctgcctaa aatgcagtgg tatcttaaga tcccaggtac actggctgga
     4441 ggttacttag ctcagcactg tctttggtta agcttagaca agatgctagt gatcagaagc
     4501 agccctctgg cttcccatgg ccggtagctc ctctgaagtg cacaggggtg caggttcatg
     4561 taattcacag agcaggactg ggaactgctg tcagcatatt ctggctgccc gcccgcccag
     4621 ggggtgcagc tggtgcatgc cgagtgcagc gtgaagctgc agccgctgcc ctcatttctt
     4681 ttttttcacc atgaccaggg cagcactagc accatgctcc tcgacggaag ggactgggag
     4741 gggagggact gcaccaagac ccccacactc agaaccacag tgacatttgt gagctggctc
     4801 aaagacaaag gaattatggt gtagacagga attcaaaatc tttgtttagt caccaacaaa
     4861 aaaaacctca cttttagtta acatgtgcca ttaaacaaat gacactccgt gggtttgggg
     4921 agattttcca gctaggatgg atccagaata attgaatggt gcttaaattg agaaataata
     4981 aatatatcta tatagagtag acatttccca ctatatatta attgaggttg cataaagttc
     5041 tttatataaa acttatttaa aattttcata tttcatcttt gaaaatgtct aattgagaaa
     5101 aattcatgat attttctggt atgaaagttt gacagtatta atttttttat attttcttaa
     5161 atcattaaac cattttaata tatgttaact actaataaat ggtttattct ttctaactcc
     5221 atgtaagctt ttccaacgaa gattgtaata acacatttat gttctcattt ttctacagat
     5281 aaatttatat ttaaaaatac caaaaaaacc cctatgtata cacaccacac atgcacacac
     5341 acattcacac acaagaaaat tattgaggac ctgtagggtg tctgagccca gccacctgcg
     5401 tctttagtac tgtgtctcta ggctgcctga ggcctcagct gttgtcattc atgctgtggg
     5461 tgccatgtct gcctgtactg acgatccttc tcagtggctt cggaatattc acctcaccat
     5521 gtttacagag aactattttg tatatagagt tttccaggca cgtactttgc accaaccctg
     5581 cgtggctgct gtctgtgtta gctgtcacag tgtgcacact aatctgttca aagttcttgt
     5641 ggctgtttta cttgtaaaaa ctttctattt ccttcagtaa tgtgtccaca gtgccctgtg
     5701 tttcgagttc tagtctactg cagtactctc attgtcatag tgcctccctg aagacctcac
     5761 cctgggccaa ggtcgctcct cggtgcccca gcacaggtga cactgctaat tgtcatctct
     5821 ggtctgtttt tctctattaa ggacaacgtt ttgtctctgt ggctgtgaga ctgtgtgaat
     5881 cggtttgtgt ggtctccacg taggtgctgt ccgcacacca cctgctctaa acactggtaa
     5941 ttccaggtgc tgcgcttggc agaggcatct ctccaaagcg catgtatgtg tgagtgtcct
     6001 tagcacggcc aagcatggct gccttgctcg gcatcagcag gacatcatgt gactagttgt
     6061 gaccttccaa actggaactc tacattttgt atcttacttt taaagctcct ataagtaaaa
     6121 taacttggct ttattaaaat atacatttaa taata
//
