LOCUS       XM_039106198            3571 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus GTPase activating Rap/RanGAP
            domain-like 3 (Garnl3), transcript variant X13, mRNA.
ACCESSION   XM_039106198
VERSION     XM_039106198.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106198.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3571
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3571
                     /gene="Garnl3"
                     /note="GTPase activating Rap/RanGAP domain-like 3; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 14 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:499783"
                     /db_xref="RGD:1564019"
     CDS             749..3289
                     /gene="Garnl3"
                     /codon_start=1
                     /product="GTPase-activating Rap/Ran-GAP domain-like
                     protein 3 isoform X9"
                     /protein_id="XP_038962126.1"
                     /db_xref="GeneID:499783"
                     /db_xref="RGD:1564019"
                     /translation="MNLDKFEKGPREIFHPEIQKDLLVLEEQEGSVNFKFGVLFAKDG
                     QLTDDEMFSNEIGSEAFQKFLNLLGDTITLKGWTGYRGGLDTKNNTTGINSVYTVYQG
                     HEVMFHVSTMLPYSKENRQQVERKRHIGNDIVTIVFQEGEESSPAFKPSMIRSHFTHI
                     FALVRYDQQNDNYRLKIFSEESVPLFGPPLPSPPVFTDHQEFRDFLLVKLINGEKATL
                     ETPTFAQKRRRTLDMLIRSLYQDLMPDLHKNMLNRRSFSDVLPESPKSARKKEEARQA
                     EFVRIGQALKLKSIVRGDAPSSLAASGICKKEPWEPQCFCCNFPHEAVCADPWGQALL
                     VSTDAGVLLVDDDLPSVPVFDRTLPVKQIHVLETLDLLVLRADKGKDARLFVFRLSAV
                     QKGLDGRQTGRSRSDCRENKLEKTKGCHLYAINTHHSRELRIVVAIRNKLLLITRKPH
                     NKPSGVPGTSLLSPMSESPVEEFQYIREICLCDSPAVMALVDGPTEESDNLICVAYRH
                     QFDVVNESTGEAFRLHHVEANKVNFVAAVDVYEDGEAGLLLCYNYSCIYKKVCPFNGG
                     SFLLQPSASDFQFCWNQAPYAIVCAFPYLLAFTTDSMEIRLVVNGNLVHTAVVPQLQL
                     VASRSDIYFTAATTVHEGSSGGSSKGASAHTSPQTPPARDTPLFPSSLGEGEIQSKNL
                     YKIPLRNLVGRSIERPLKSPLVSKVITPPTSIGLGVAAIPVTHSLSLSRMEIKEIASR
                     TRRELLGLSDDGGPKSEGAPRAKSKTRKRLEESQGSPKPETMRSASSDRIPSGVLESP
                     ASEAIPEGQNHSTSSEQDPVLDKEGSPGTGSSPFQLTASSEEDIIDLK"
ORIGIN      
        1 tctctctctc tctctctctc tctcatgtta acacgtaaaa atcttaaatt aaaagctggg
       61 ggaagggagg ggagcctatg aggatttggg aatttttgtc tcctccttaa aatgcagctt
      121 taaatgatgc tggttatttt tatgttgcat atttgggaca aagagactct actcttttaa
      181 gcaaaagata attgcaagat ctggttcggc agctttgtcc cttgcctcaa gttcctgcgg
      241 ggctgccatc cccttcggta atgctgagtg aaatcataag ccgccaatag ctttgggaat
      301 ttcaattgat tccaactctg tctcagaaga cctaggctgt agacgtgggg atttcagtag
      361 gaaacattat ggatctgtgg agctgctcat ctctagtgat gcagatggag ccatccaaag
      421 agcaggaaga ttccgagtgg aaaatggctc tacagatgag aacgcagctg ctctgccagg
      481 cacttggcga aggacagacg tgcacttaga aaacccagag taccacaccc ggtggtattt
      541 caagtacttt ttaggacaag tccatcagaa ttacattgga aatgatgccg agaagagtcc
      601 cttcttcttg tctgtcacac tctctgacca gaataaccag cgtgtccctc agtatcgtgc
      661 gattctgtgg cggaaaacag gtacgcaaaa aatatgcctc ccctacagtc ccaccaaaac
      721 gctgtctgtg aagtccatct taagtgccat gaacctggac aagtttgaga aaggacctag
      781 ggaaattttt catcctgaga tacaaaagga cttgctggtt ctggaagagc aagagggctc
      841 tgtgaatttc aaatttgggg ttctttttgc caaagatggg cagctcacag acgacgagat
      901 gttcagcaat gaaattggaa gtgaagcttt tcaaaaattt ttaaatctcc ttggtgacac
      961 cattactcta aagggctgga caggctaccg tggcggtctg gacaccaaaa ataacaccac
     1021 agggatcaac tcggtctata ctgtgtacca agggcatgag gtcatgtttc acgtttccac
     1081 catgttgccg tattccaaag agaacagaca acaggtggaa aggaagcgcc acattggaaa
     1141 cgatattgtc accatcgtgt tccaggaagg agaggagtcc tctcctgcct ttaagccttc
     1201 catgatccgt tcccatttta cacatatttt tgccttagtg aggtatgacc agcaaaatga
     1261 caactacagg ctgaaaatat tttcagaaga aagtgtgcca ctttttggcc cacccttgcc
     1321 ctcccctccg gtgtttacag accaccagga attcagggac tttttgcttg tgaaattaat
     1381 taacggtgaa aaagccactt tggaaacccc aacctttgcc cagaaacgcc ggcgtactct
     1441 ggacatgttg atccgctcct tataccagga tttgatgccg gatttgcata agaatatgct
     1501 caatcggcga tctttcagtg atgttttacc cgagtcaccc aagtcagcac ggaagaaaga
     1561 ggaggcccgc caggccgagt ttgttagaat agggcaggcc ctgaagctca agtccattgt
     1621 gagaggggat gccccatcaa gcttggcagc atcaggaata tgtaaaaagg agccttggga
     1681 gccccaatgt ttctgctgta atttccctca cgaagctgtg tgtgcagatc cctggggcca
     1741 ggccttgctg gtttccactg atgccggcgt cttgctagtg gatgatgacc tcccatccgt
     1801 gcccgtgttt gacagaactc tacccgtgaa gcagatccac gtgcttgaga ctctggacct
     1861 tctggttctc agagcagaca aagggaaaga tgcccgcctc tttgtctttc ggctgagtgc
     1921 ggtgcagaaa ggccttgatg gcaggcagac cggaaggagc agatctgact gccgagaaaa
     1981 caagttggag aaaaccaaag gatgccacct atatgctatt aatactcacc acagcagaga
     2041 actgagaatc gtggttgcaa ttcgcaataa actgcttctc atcacaagga aaccacacaa
     2101 caagccaagt ggggtgccag gtacctcact cctgtccccg atgtcggagt ctcctgttga
     2161 ggaattccag tatatcaggg aaatctgtct gtgtgactcc ccggcggtga tggccttagt
     2221 ggatgggcca acagaggaga gcgacaacct catctgtgtg gcgtatcgcc atcagttcga
     2281 tgtggtaaat gagagcacag gggaagcctt tcggctgcac cacgtagagg ccaacaaggt
     2341 caatttcgtt gcagctgttg atgtgtatga ggacggagaa gccggcctgc tcctctgcta
     2401 caactacagt tgcatctata aaaaggtttg cccctttaac ggtggctctt ttttgcttca
     2461 accctcggca tcggatttcc agttctgttg gaaccaggct ccatatgcaa ttgtctgcgc
     2521 cttcccatac ctcctggcct tcaccaccga ctccatggag atccgcttgg tggtgaatgg
     2581 gaacctggtc cacacggcgg ttgtgccaca gctgcagctc gtagcctcca ggtcagatat
     2641 atacttcaca gcagccacaa ctgtgcatga gggctcatct ggaggcagct caaagggggc
     2701 cagtgcacac acatctcctc agacaccacc ggcccgggac actccactgt ttccttcttc
     2761 cctgggggaa ggtgaaattc agtctaaaaa tctgtacaag attccactta gaaaccttgt
     2821 gggcagaagc atcgagcgac ctctgaaatc gcccttagtc tccaaggtca tcaccccgcc
     2881 cacctccatc ggccttggag tcgccgccat tcctgtcaca cattccttgt ccctctcccg
     2941 catggaaatt aaagagatag caagcaggac ccgcagggag ctgctaggcc tctctgatga
     3001 tggtgggccc aagtcagaag gagcaccaag ggctaaatca aaaacccgga agcggttgga
     3061 agaaagccaa ggaagcccca agccagagac tatgaggtca gctagcagtg acaggatccc
     3121 atcgggagtg ttggaaagtc cagcgtcaga agccattccc gagggccaga accactcgac
     3181 aagctctgag caggaccctg tattggacaa agagggcagc ccgggcacag gcagcagccc
     3241 cttccagctc acggcctcct ctgaggaaga catcattgat ttgaaataga gtctgtgtcc
     3301 cgtggtcctc cttagttttc ttatgcagat ttgtactgtt caaacagcgc ccacgttcag
     3361 ttccaacaaa gcgcgccttc agccaggcag cgatctaccg gaccaaacct gcaccctcag
     3421 ccagtttggg tcactctcca gtgtccagtg ccatctttct tgaccctgtt tctttccact
     3481 caagacccgt cagtcccctt gtaataaagg tggtagattt cattaaggtt ttagatcaaa
     3541 actttgaata aatcaaaaac attcattctt a
//
