LOCUS       XM_039106184            3691 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus GTPase activating Rap/RanGAP
            domain-like 3 (Garnl3), transcript variant X1, mRNA.
ACCESSION   XM_039106184
VERSION     XM_039106184.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3691
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3691
                     /gene="Garnl3"
                     /note="GTPase activating Rap/RanGAP domain-like 3; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 15 ESTs, 6 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     9 samples with support for all annotated introns"
                     /db_xref="GeneID:499783"
                     /db_xref="RGD:1564019"
     CDS             119..3409
                     /gene="Garnl3"
                     /codon_start=1
                     /product="GTPase-activating Rap/Ran-GAP domain-like
                     protein 3 isoform X1"
                     /protein_id="XP_038962112.1"
                     /db_xref="GeneID:499783"
                     /db_xref="RGD:1564019"
                     /translation="MEQEPGGAAAALLRQKRAALRRRGCSFESPSTAPQPPGPLMDPL
                     TKGSCGSQLAQTLLWKAKSSLSFGIQPLQTWPTKDPELESQVNLRCVARSLCVILMKH
                     FCSSSVSEDLGCRRGDFSRKHYGSVELLISSDADGAIQRAGRFRVENGSTDENAAALP
                     GTWRRTDVHLENPEYHTRWYFKYFLGQVHQNYIGNDAEKSPFFLSVTLSDQNNQRVPQ
                     YRAILWRKTGTQKICLPYSPTKTLSVKSILSAMNLDKFEKGPREIFHPEIQKDLLVLE
                     EQEGSVNFKFGVLFAKDGQLTDDEMFSNEIGSEAFQKFLNLLGDTITLKGWTGYRGGL
                     DTKNNTTGINSVYTVYQGHEVMFHVSTMLPYSKENRQQVERKRHIGNDIVTIVFQEGE
                     ESSPAFKPSMIRSHFTHIFALVRYDQQNDNYRLKIFSEESVPLFGPPLPSPPVFTDHQ
                     EFRDFLLVKLINGEKATLETPTFAQKRRRTLDMLIRSLYQDLMPDLHKNMLNRRSFSD
                     VLPESPKSARKKEEARQAEFVRIGQALKLKSIVRGDAPSSLAASGICKKEPWEPQCFC
                     CNFPHEAVCADPWGQALLVSTDAGVLLVDDDLPSVPVFDRTLPVKQIHVLETLDLLVL
                     RADKGKDARLFVFRLSAVQKGLDGRQTGRSRSDCRENKLEKTKGCHLYAINTHHSREL
                     RIVVAIRNKLLLITRKPHNKPSGVPGTSLLSPMSESPVEEFQYIREICLCDSPAVMAL
                     VDGPTEESDNLICVAYRHQFDVVNESTGEAFRLHHVEANKVNFVAAVDVYEDGEAGLL
                     LCYNYSCIYKKVCPFNGGSFLLQPSASDFQFCWNQAPYAIVCAFPYLLAFTTDSMEIR
                     LVVNGNLVHTAVVPQLQLVASRSDIYFTAATTVHEGSSGGSSKGASAHTSPQTPPARD
                     TPLFPSSLGEGEIQSKNLYKIPLRNLVGRSIERPLKSPLVSKVITPPTSIGLGVAAIP
                     VTHSLSLSRMEIKEIASRTRRELLGLSDDGGPKSEGAPRAKSKTRKRLEESQGSPKPE
                     TMRSASSDRIPSGVLESPASEAIPEGQNHSTSSEQDPVLDKEGSPGTGSSPFQLTASS
                     EEDIIDLK"
ORIGIN      
        1 cggtgagggg tgcggggcgg ggcgtgggct gcggcgcgct agctgagcgt ccagccgaac
       61 accgccgagg cccgagccca cccgagtgtg cccgagccgt cggcccccgc ccggggcgat
      121 ggagcaggaa cccggcgggg cggccgctgc gctcctgcgg cagaagaggg cggcgctgcg
      181 gcgcaggggg tgcagctttg agagtcccag cacagcacct cagcctccag gcccactgat
      241 ggatccactg accaaggggt cctgtgggag tcagctggca caaaccctcc tctggaaagc
      301 gaagtcatct ctctctttcg gcatccagcc ccttcagact tggccaacaa aggatcctga
      361 actagagtcc caggtcaacc taaggtgtgt agccagatcg ctatgtgtaa tactgatgaa
      421 gcatttttgt tccagctctg tctcagaaga cctaggctgt agacgtgggg atttcagtag
      481 gaaacattat ggatctgtgg agctgctcat ctctagtgat gcagatggag ccatccaaag
      541 agcaggaaga ttccgagtgg aaaatggctc tacagatgag aacgcagctg ctctgccagg
      601 cacttggcga aggacagacg tgcacttaga aaacccagag taccacaccc ggtggtattt
      661 caagtacttt ttaggacaag tccatcagaa ttacattgga aatgatgccg agaagagtcc
      721 cttcttcttg tctgtcacac tctctgacca gaataaccag cgtgtccctc agtatcgtgc
      781 gattctgtgg cggaaaacag gtacgcaaaa aatatgcctc ccctacagtc ccaccaaaac
      841 gctgtctgtg aagtccatct taagtgccat gaacctggac aagtttgaga aaggacctag
      901 ggaaattttt catcctgaga tacaaaagga cttgctggtt ctggaagagc aagagggctc
      961 tgtgaatttc aaatttgggg ttctttttgc caaagatggg cagctcacag acgacgagat
     1021 gttcagcaat gaaattggaa gtgaagcttt tcaaaaattt ttaaatctcc ttggtgacac
     1081 cattactcta aagggctgga caggctaccg tggcggtctg gacaccaaaa ataacaccac
     1141 agggatcaac tcggtctata ctgtgtacca agggcatgag gtcatgtttc acgtttccac
     1201 catgttgccg tattccaaag agaacagaca acaggtggaa aggaagcgcc acattggaaa
     1261 cgatattgtc accatcgtgt tccaggaagg agaggagtcc tctcctgcct ttaagccttc
     1321 catgatccgt tcccatttta cacatatttt tgccttagtg aggtatgacc agcaaaatga
     1381 caactacagg ctgaaaatat tttcagaaga aagtgtgcca ctttttggcc cacccttgcc
     1441 ctcccctccg gtgtttacag accaccagga attcagggac tttttgcttg tgaaattaat
     1501 taacggtgaa aaagccactt tggaaacccc aacctttgcc cagaaacgcc ggcgtactct
     1561 ggacatgttg atccgctcct tataccagga tttgatgccg gatttgcata agaatatgct
     1621 caatcggcga tctttcagtg atgttttacc cgagtcaccc aagtcagcac ggaagaaaga
     1681 ggaggcccgc caggccgagt ttgttagaat agggcaggcc ctgaagctca agtccattgt
     1741 gagaggggat gccccatcaa gcttggcagc atcaggaata tgtaaaaagg agccttggga
     1801 gccccaatgt ttctgctgta atttccctca cgaagctgtg tgtgcagatc cctggggcca
     1861 ggccttgctg gtttccactg atgccggcgt cttgctagtg gatgatgacc tcccatccgt
     1921 gcccgtgttt gacagaactc tacccgtgaa gcagatccac gtgcttgaga ctctggacct
     1981 tctggttctc agagcagaca aagggaaaga tgcccgcctc tttgtctttc ggctgagtgc
     2041 ggtgcagaaa ggccttgatg gcaggcagac cggaaggagc agatctgact gccgagaaaa
     2101 caagttggag aaaaccaaag gatgccacct atatgctatt aatactcacc acagcagaga
     2161 actgagaatc gtggttgcaa ttcgcaataa actgcttctc atcacaagga aaccacacaa
     2221 caagccaagt ggggtgccag gtacctcact cctgtccccg atgtcggagt ctcctgttga
     2281 ggaattccag tatatcaggg aaatctgtct gtgtgactcc ccggcggtga tggccttagt
     2341 ggatgggcca acagaggaga gcgacaacct catctgtgtg gcgtatcgcc atcagttcga
     2401 tgtggtaaat gagagcacag gggaagcctt tcggctgcac cacgtagagg ccaacaaggt
     2461 caatttcgtt gcagctgttg atgtgtatga ggacggagaa gccggcctgc tcctctgcta
     2521 caactacagt tgcatctata aaaaggtttg cccctttaac ggtggctctt ttttgcttca
     2581 accctcggca tcggatttcc agttctgttg gaaccaggct ccatatgcaa ttgtctgcgc
     2641 cttcccatac ctcctggcct tcaccaccga ctccatggag atccgcttgg tggtgaatgg
     2701 gaacctggtc cacacggcgg ttgtgccaca gctgcagctc gtagcctcca ggtcagatat
     2761 atacttcaca gcagccacaa ctgtgcatga gggctcatct ggaggcagct caaagggggc
     2821 cagtgcacac acatctcctc agacaccacc ggcccgggac actccactgt ttccttcttc
     2881 cctgggggaa ggtgaaattc agtctaaaaa tctgtacaag attccactta gaaaccttgt
     2941 gggcagaagc atcgagcgac ctctgaaatc gcccttagtc tccaaggtca tcaccccgcc
     3001 cacctccatc ggccttggag tcgccgccat tcctgtcaca cattccttgt ccctctcccg
     3061 catggaaatt aaagagatag caagcaggac ccgcagggag ctgctaggcc tctctgatga
     3121 tggtgggccc aagtcagaag gagcaccaag ggctaaatca aaaacccgga agcggttgga
     3181 agaaagccaa ggaagcccca agccagagac tatgaggtca gctagcagtg acaggatccc
     3241 atcgggagtg ttggaaagtc cagcgtcaga agccattccc gagggccaga accactcgac
     3301 aagctctgag caggaccctg tattggacaa agagggcagc ccgggcacag gcagcagccc
     3361 cttccagctc acggcctcct ctgaggaaga catcattgat ttgaaataga gtctgtgtcc
     3421 cgtggtcctc cttagttttc ttatgcagat ttgtactgtt caaacagcgc ccacgttcag
     3481 ttccaacaaa gcgcgccttc agccaggcag cgatctaccg gaccaaacct gcaccctcag
     3541 ccagtttggg tcactctcca gtgtccagtg ccatctttct tgaccctgtt tctttccact
     3601 caagacccgt cagtcccctt gtaataaagg tggtagattt cattaaggtt ttagatcaaa
     3661 actttgaata aatcaaaaac attcattctt a
//
