LOCUS       NM_001145401            3063 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus golgi associated RAB2 interactor family member 5B
            (Garin5b), mRNA.
ACCESSION   NM_001145401 XM_001071633 XM_218220
VERSION     NM_001145401.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3063)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC161877.1 and
            JAXUCZ010000001.1.
            
            On or before Feb 25, 2009 this sequence version replaced
            XM_001071633.1, XM_218220.4.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used were based
            on transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760383, SAMEA5760389
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            NMD candidate          :: translation inferred from conservation
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1234              BC161877.1         1-1234
            1235-2327           JAXUCZ010000001.1  78118160-78119252
            2328-3063           BC161877.1         1235-1970
FEATURES             Location/Qualifiers
     source          1..3063
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..3063
                     /gene="Garin5b"
                     /gene_synonym="Fam71e2; RGD1310169"
                     /note="golgi associated RAB2 interactor family member 5B"
                     /db_xref="GeneID:308344"
                     /db_xref="RGD:1310169"
     exon            1..321
                     /gene="Garin5b"
                     /gene_synonym="Fam71e2; RGD1310169"
                     /inference="alignment:Splign:2.1.0"
     CDS             172..2757
                     /gene="Garin5b"
                     /gene_synonym="Fam71e2; RGD1310169"
                     /note="putative protein FAM71E2; family with sequence
                     similarity 71, member E2"
                     /codon_start=1
                     /product="Golgi-associated RAB2 interactor protein 5B"
                     /protein_id="NP_001138873.1"
                     /db_xref="GeneID:308344"
                     /db_xref="RGD:1310169"
                     /translation="MLRRLWNFIFPPPPEPPKWVPILGEMQKTLEMAEYLPLRPLPMF
                     ESNFTQVNNNGTPALLHNKPNKLTMGVAASLPGLVLPDILLIARPPDGQECSSLILTR
                     MIPLDLARLYVHDLTTWRLKLRLRSGRHYFLALDAPEHELAFLFDRWIRLINMLREPK
                     LSRGPKSVAVDPSHRETAPEGTPASTWHFQTQSQGELTVEVAAQPFPCKIFSSQKPKK
                     TKVKLTKVKQPGQPVKHTFRSQAVGDSVPLIWSQLQSSEDQMEVTRNKSDLDACSERP
                     EPLIDVSDKTSVTIRTIFSIVSKTTNQAHKSDSEEDTGRDPRMETPTKCISQNNSCLP
                     VVDSDHLDTLLWPPNIDHLMGIPSNTVTSLNSSFPAAFYIFPPSPSFLKSKDKARSTI
                     SKKHARPLSSHKAASVPIESGKMPFILDQSNKVPAKPAPAQMASALPIPSPKIPTSQW
                     SRQKSSATPSCFYKSQPSVSQKTPTIPGHPQKPQVVTAPTQKTLTLNQKFLQALAHPQ
                     KAMHLKKDHLLINTRSQKDPTAQYQKALDSRAKDLVNPSTLQGGDMLERKTEGKQEPV
                     LLVGEQNKKVVDMRAQTMSVNLPFATTKKQSKEILISKTQEVTLEALKGREKLEDRVH
                     KMEEETTVNLPGLKSKETEMQKKWVLNKEVAFEGPYTEDNRPFSVEGLALAKMMIMAN
                     SKHQHLKPATISLPSSFPMTNKVSSMSVLANLPYNTRQMTFPERTQVVIVEKSGSHTK
                     VNKEKTQHQKERKLPEDLLSTAQKPISLDDKSEPLTSFTSSISPTSETKTSVKVPQKP
                     VVKHQGLKAQSQHHPSLVTRSTSEILLPVNLRTENKGKTATKAEMPVKESGARHTQQR
                     PKDLR"
     exon            322..476
                     /gene="Garin5b"
                     /gene_synonym="Fam71e2; RGD1310169"
                     /inference="alignment:Splign:2.1.0"
     exon            477..741
                     /gene="Garin5b"
                     /gene_synonym="Fam71e2; RGD1310169"
                     /inference="alignment:Splign:2.1.0"
     exon            742..766
                     /gene="Garin5b"
                     /gene_synonym="Fam71e2; RGD1310169"
                     /inference="alignment:Splign:2.1.0"
     exon            767..858
                     /gene="Garin5b"
                     /gene_synonym="Fam71e2; RGD1310169"
                     /inference="alignment:Splign:2.1.0"
     exon            859..968
                     /gene="Garin5b"
                     /gene_synonym="Fam71e2; RGD1310169"
                     /inference="alignment:Splign:2.1.0"
     exon            969..1021
                     /gene="Garin5b"
                     /gene_synonym="Fam71e2; RGD1310169"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1080
                     /gene="Garin5b"
                     /gene_synonym="Fam71e2; RGD1310169"
                     /inference="alignment:Splign:2.1.0"
     exon            1081..2470
                     /gene="Garin5b"
                     /gene_synonym="Fam71e2; RGD1310169"
                     /inference="alignment:Splign:2.1.0"
     exon            2471..2733
                     /gene="Garin5b"
                     /gene_synonym="Fam71e2; RGD1310169"
                     /inference="alignment:Splign:2.1.0"
     exon            2734..2813
                     /gene="Garin5b"
                     /gene_synonym="Fam71e2; RGD1310169"
                     /inference="alignment:Splign:2.1.0"
     exon            2814..3024
                     /gene="Garin5b"
                     /gene_synonym="Fam71e2; RGD1310169"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccataccag agtctctcag ccctggagac actccacttt ctgtcactgc tgagctcctg
       61 acatccttga agcccaaggg tccaaagctg gtgggctggg gtggtggtca gggctccact
      121 tgtggccagg atccttgaat ctatacgacc ccacccacag ttctggcagc catgttgaga
      181 cggctgtgga actttatttt tcctccgcct ccggagcctc cgaagtgggt ccccattctt
      241 ggagagatgc agaagaccct cgagatggcc gagtacctgc ccctccgccc gctgcccatg
      301 ttcgagagta actttaccca ggtgaacaac aatgggactc ctgcgttatt gcacaacaaa
      361 cccaacaagc tgactatggg tgtcgcagca tccttgcctg gcctagtgct gcctgacatt
      421 ctgttgattg ctcggccccc ggatggccag gagtgctcca gtctcatcct aaccaggatg
      481 atcccattag accttgcccg tctctatgtc catgatctga ccacctggcg tctgaagctg
      541 cgtctgagat ccggccgcca ctatttcctg gcactggatg cccctgaaca tgagctggcc
      601 tttctgtttg accgctggat tcgtctcatc aacatgctgc gtgagcctaa attatcccgg
      661 ggaccaaaga gcgtggcggt ggacccttcc caccgagaaa cagccccaga aggaactcct
      721 gcctccacat ggcacttcca gacccagtct caaggtgaac ttacagttga agttgcagct
      781 caaccttttc cttgcaaaat attctcttct caaaaaccaa agaagaccaa ggtgaagctg
      841 actaaagtga agcagccagg acagccagtc aagcacacat tcaggtctca ggctgtgggt
      901 gactctgtgc ctctcatctg gtcacaactg caatcttctg aggatcagat ggaagtcaca
      961 aggaacaagt ccgatctaga tgcctgctct gagagacctg aacctctaat tgatgtttct
     1021 gacaagacca gcgtcaccat ccggaccatc ttcagcatcg tctctaagac gacaaaccag
     1081 gcccacaaat ctgattctga ggaggacaca ggccgggatc cacgaatgga gactcctacc
     1141 aagtgtatct ctcagaacaa cagttgttta cctgtcgtgg actctgatca cctggacacc
     1201 ctcctgtggc caccaaacat tgaccatctc atgggtattc catccaacac agtgacttcc
     1261 ttgaactcat ctttccctgc tgccttctac atctttcccc ccagtccctc ctttctaaag
     1321 tccaaagaca aggccaggtc cacaatctca aagaaacatg caaggccact gtcctcccac
     1381 aaagctgcat ctgtccccat cgaatcaggg aaaatgccgt tcattttgga ccagtctaat
     1441 aaggtgccag ctaagcctgc tcctgctcag atggcctcag cccttcccat tccatcacca
     1501 aagatcccaa cttcacagtg gtcaagacag aagtcttcag ccacacctag ttgtttctat
     1561 aagtctcagc cttctgtttc tcagaagacc ccaactatcc ctggacatcc ccagaagccc
     1621 caagttgtaa ctgccccaac ccagaaaact ttaacactga atcagaagtt tctacaagca
     1681 cttgcacatc cccagaaagc catgcacctc aaaaaggacc atctactcat aaatacccgg
     1741 tctcagaaag atccaactgc ccagtaccag aaagctctcg actcacgggc taaagacctt
     1801 gtgaatccta gcacattaca gggaggagac atgcttgaga gaaagactga agggaaacag
     1861 gaacctgtgt tgttggtcgg agagcagaac aaaaaggtgg tagacatgag ggcccagacc
     1921 atgtccgtga atctgccttt tgccactacc aagaagcagt ccaaggagat cttgattagc
     1981 aaaacccaag aggtcacact ggaggccttg aagggcaggg agaagttaga ggacagggtc
     2041 cacaagatgg aggaggagac aactgtgaac ttgcctggtc taaagtccaa ggagacagag
     2101 atgcagaaga agtgggtctt gaacaaggag gtagcttttg agggccccta cacagaggac
     2161 aataggccct tctctgtgga ggggctcgcc ctggccaaga tgatgattat ggccaactcc
     2221 aaacaccagc acctgaagcc agctaccatc tctctgccct cctcattccc tatgactaac
     2281 aaggtgtctt ccatgtctgt gttggccaat ttgccctata acaccagaca gatgaccttt
     2341 ccagagagga cacaagtagt gatcgtggaa aaatcagggt cccatactaa agtgaacaag
     2401 gagaaaacac agcaccagaa ggaaaggaag ctacctgagg acttgttgag tactgcccag
     2461 aaacccataa gtttggatga caagtcagag cctttgacat ccttcacctc ctcaatatcc
     2521 cccacctctg agacaaagac ctcagtcaag gtgccccaaa agcctgtagt aaaacaccaa
     2581 ggactcaagg cacagtcaca gcatcatcct tcactggtga caaggtcaac ctcagaaatt
     2641 ctccttcctg tgaacttgcg aacggagaat aaggggaaaa cggccacaaa agctgaaatg
     2701 ccagtgaaag aatctggtgc ccgtcatact cagcagcgac ccaaggattt aagataacat
     2761 aatgcaggag actcgatctg ccagcaaatt gtccagaagc ccaatgaggc taggctagca
     2821 gggtgctgcg taccccgact gtaaggcgca gagtgctgag aacaccgagt gtggtcgcgg
     2881 agggggaggg agatgggatc ctcctcctcc catagagacc agagctagat ataaatttat
     2941 cttactgggg aggatggggc ggggctgatg gtcaaggaga agctcaattt tgtagggatt
     3001 aaaagtccta gtccgagact caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     3061 aaa
//
