LOCUS       XM_039100948             814 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus golgi associated RAB2 interactor 5A
            (Garin5a), transcript variant X11, mRNA.
ACCESSION   XM_039100948
VERSION     XM_039100948.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100948.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..814
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..814
                     /gene="Garin5a"
                     /gene_synonym="Fam71e1; RGD1311142"
                     /note="golgi associated RAB2 interactor 5A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 8 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:361564"
                     /db_xref="RGD:1311142"
     CDS             314..781
                     /gene="Garin5a"
                     /gene_synonym="Fam71e1; RGD1311142"
                     /codon_start=1
                     /product="Golgi-associated RAB2 interactor protein 5A
                     isoform X9"
                     /protein_id="XP_038956876.1"
                     /db_xref="GeneID:361564"
                     /db_xref="RGD:1311142"
                     /translation="MLFPLQFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCE
                     FGRWVRLLYRLRFHSPTCAVPFTHEDTVPEESEDEDEVEEGQLQPPEVRAGPRAQGCW
                     ARKDGKGPVSCHRGQTRPAGLRTLGALIQPRSFQITKGPEIKPAQLRAREMDF"
ORIGIN      
        1 cacctattgt aaagtcacaa gctctaggcc ccacccttta tctgtctgtc ccaggcttca
       61 cccggcgttc ctactaccca gggccggggc gtggcgatga agggcggacg agatcttaag
      121 ccggcttccg gcagagcagt ggatgccaac ccttcgcccc tgcagaccgc cccttggctc
      181 aagcctacgc cccgtgccgc cctgggcgac tccagcgcca cctcctgagc ggcgagttcg
      241 accagctgcg cgactttccc atctttgaga gcaacttcgt gcaggtgtgg agccccggac
      301 ctccaacccg ttgatgctgt ttcccttgca attcgtgcag ctgtttgttc atgacgtgag
      361 ccgccagcag ctcaaggtta agttccgaac tggccgcgcc ttttacttgc aactgcgcgc
      421 tccgccagag acccgtgact gcgagttcgg acgctgggtg cggctgctct accgcctgcg
      481 attccactcg cccacctgcg cagtgccctt cacacatgag gacactgtgc ctgaggagtc
      541 tgaggatgag gatgaggtcg aggaggggca gttgcagccc ccggaggtga gggcgggacc
      601 tcgagcccag ggatgttggg ccaggaagga tggaaaggga ccagtttcat gccacagagg
      661 ccagactcga cccgcaggtc tcagaactct gggggctctg attcagccaa gatccttcca
      721 gatcaccaaa ggaccagaaa tcaagccagc tcagctcaga gccagagaga tggattttta
      781 aacttaataa agatcaggct cttaagaact aata
//
