LOCUS       XM_039100945             914 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus golgi associated RAB2 interactor 5A
            (Garin5a), transcript variant X8, mRNA.
ACCESSION   XM_039100945
VERSION     XM_039100945.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100945.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..914
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..914
                     /gene="Garin5a"
                     /gene_synonym="Fam71e1; RGD1311142"
                     /note="golgi associated RAB2 interactor 5A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 11 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:361564"
                     /db_xref="RGD:1311142"
     CDS             321..881
                     /gene="Garin5a"
                     /gene_synonym="Fam71e1; RGD1311142"
                     /codon_start=1
                     /product="Golgi-associated RAB2 interactor protein 5A
                     isoform X8"
                     /protein_id="XP_038956873.1"
                     /db_xref="GeneID:361564"
                     /db_xref="RGD:1311142"
                     /translation="MGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVH
                     DVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDT
                     VPEESEDEDEVEEGQLQPPEVRAGPRAQGCWARKDGKGPVSCHRGQTRPAGLRTLGAL
                     IQPRSFQITKGPEIKPAQLRAREMDF"
ORIGIN      
        1 cacctattgt aaagtcacaa gctctaggcc ccacccttta tctgtctgtc ccaggcttca
       61 cccggcgttc ctactaccca gggccggggc gtggcgatga agggcggacg agatcttaag
      121 ccggcttccg gcagagcagt ggatgccaac ccttcgcccc tgcagaccgc cccttggctc
      181 aagcctacgc cccgtgccgc cctgggcgac tccagcgcca cctcctgagc ggcgagttcg
      241 accagctgcg cgactttccc atctttgaga gcaacttcgt gcaggtgacc cggtttggag
      301 aagtcgccaa caaggtcacc atgggggtgg cagcctctag ccctgccctg gagctgccag
      361 acctgctgct gctagccggc cctgacaagg agaatggaca cctgcagctc ctcgggctgt
      421 ttcccttgca attcgtgcag ctgtttgttc atgacgtgag ccgccagcag ctcaaggtta
      481 agttccgaac tggccgcgcc ttttacttgc aactgcgcgc tccgccagag acccgtgact
      541 gcgagttcgg acgctgggtg cggctgctct accgcctgcg attccactcg cccacctgcg
      601 cagtgccctt cacacatgag gacactgtgc ctgaggagtc tgaggatgag gatgaggtcg
      661 aggaggggca gttgcagccc ccggaggtga gggcgggacc tcgagcccag ggatgttggg
      721 ccaggaagga tggaaaggga ccagtttcat gccacagagg ccagactcga cccgcaggtc
      781 tcagaactct gggggctctg attcagccaa gatccttcca gatcaccaaa ggaccagaaa
      841 tcaagccagc tcagctcaga gccagagaga tggattttta aacttaataa agatcaggct
      901 cttaagaact aata
//
