LOCUS       NM_001400842             828 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus golgi associated RAB2 interactor 5A (Garin5a),
            mRNA.
ACCESSION   NM_001400842 XM_341847
VERSION     NM_001400842.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jan 28, 2022 this sequence version replaced XM_341847.9.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.1106034.1,
                                           SRR26360176.120728.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-139               JAXUCZ010000001.1  104125501-104125639
            140-258             JAXUCZ010000001.1  104125824-104125942
            259-389             JAXUCZ010000001.1  104126389-104126519
            390-660             JAXUCZ010000001.1  104129076-104129346
            661-828             JAXUCZ010000001.1  104129887-104130054
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..828
                     /gene="Garin5a"
                     /gene_synonym="Fam71e1; RGD1311142"
                     /note="golgi associated RAB2 interactor 5A"
                     /db_xref="GeneID:361564"
                     /db_xref="RGD:1311142"
     exon            1..139
                     /gene="Garin5a"
                     /gene_synonym="Fam71e1; RGD1311142"
                     /inference="alignment:Splign:2.1.0"
     CDS             97..717
                     /gene="Garin5a"
                     /gene_synonym="Fam71e1; RGD1311142"
                     /note="family with sequence similarity 71, member E1"
                     /codon_start=1
                     /product="Golgi-associated RAB2 interactor protein 5A"
                     /protein_id="NP_001387771.1"
                     /db_xref="GeneID:361564"
                     /db_xref="RGD:1311142"
                     /translation="MKGGRDLKPASGRADRPLAQAYAPCRPGRLQRHLLSGEFDQLRD
                     FPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPL
                     QFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCA
                     VPFTHEDTVPEESEDEDEVEEGQLQPPEFHATEARLDPQVSELWGL"
     exon            140..258
                     /gene="Garin5a"
                     /gene_synonym="Fam71e1; RGD1311142"
                     /inference="alignment:Splign:2.1.0"
     exon            259..389
                     /gene="Garin5a"
                     /gene_synonym="Fam71e1; RGD1311142"
                     /inference="alignment:Splign:2.1.0"
     exon            390..660
                     /gene="Garin5a"
                     /gene_synonym="Fam71e1; RGD1311142"
                     /inference="alignment:Splign:2.1.0"
     exon            661..828
                     /gene="Garin5a"
                     /gene_synonym="Fam71e1; RGD1311142"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacctattgt aaagtcacaa gctctaggcc ccacccttta tctgtctgtc ccaggcttca
       61 cccggcgttc ctactaccca gggccggggc gtggcgatga agggcggacg agatcttaag
      121 ccggcttccg gcagagcaga ccgccccttg gctcaagcct acgccccgtg ccgccctggg
      181 cgactccagc gccacctcct gagcggcgag ttcgaccagc tgcgcgactt tcccatcttt
      241 gagagcaact tcgtgcaggt gacccggttt ggagaagtcg ccaacaaggt caccatgggg
      301 gtggcagcct ctagccctgc cctggagctg ccagacctgc tgctgctagc cggccctgac
      361 aaggagaatg gacacctgca gctcctcggg ctgtttccct tgcaattcgt gcagctgttt
      421 gttcatgacg tgagccgcca gcagctcaag gttaagttcc gaactggccg cgccttttac
      481 ttgcaactgc gcgctccgcc agagacccgt gactgcgagt tcggacgctg ggtgcggctg
      541 ctctaccgcc tgcgattcca ctcgcccacc tgcgcagtgc ccttcacaca tgaggacact
      601 gtgcctgagg agtctgagga tgaggatgag gtcgaggagg ggcagttgca gcccccggag
      661 tttcatgcca cagaggccag actcgacccg caggtctcag aactctgggg gctctgattc
      721 agccaagatc cttccagatc accaaaggac cagaaatcaa gccagctcag ctcagagcca
      781 gagagatgga tttttaaact taataaagat caggctctta agaactaa
//
