LOCUS       NM_001017469            1551 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus golgi associated RAB2 interactor family member 2
            (Garin2), mRNA.
ACCESSION   NM_001017469 XM_576056
VERSION     NM_001017469.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1551)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC078980.1.
            
            [WARNING] On Oct 18, 2024 this sequence was replaced by
            NM_001017469.2.
            
            On Apr 29, 2005 this sequence version replaced XM_576056.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC078980.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..1551
                     /gene="Garin2"
                     /gene_synonym="Fam71d"
                     /note="golgi associated RAB2 interactor family member 2"
                     /db_xref="GeneID:366671"
                     /db_xref="RGD:1564393"
     exon            1..79
                     /gene="Garin2"
                     /gene_synonym="Fam71d"
                     /inference="alignment:Splign:2.1.0"
     exon            80..166
                     /gene="Garin2"
                     /gene_synonym="Fam71d"
                     /inference="alignment:Splign:2.1.0"
     exon            167..329
                     /gene="Garin2"
                     /gene_synonym="Fam71d"
                     /inference="alignment:Splign:2.1.0"
     CDS             168..1499
                     /gene="Garin2"
                     /gene_synonym="Fam71d"
                     /note="family with sequence similarity 71, member D"
                     /codon_start=1
                     /product="Golgi-associated RAB2 interactor protein 2"
                     /protein_id="NP_001017469.1"
                     /db_xref="GeneID:366671"
                     /db_xref="RGD:1564393"
                     /translation="MMKKNKSKSKKLVNKQDALCIPHYYRLGHLKNILDGGEYAPYVS
                     PPILESNFIQVNRRGESIYLHNRANWVTVGICSSNHVFKTPNMMLLAHLTTEARKEQE
                     PLFKTILKSSSPGNLVLTRFIPLQFVTISVHSAKNMRLKVKLINGRSYYLQLCAPMYK
                     QDIIFSQWVDLIPLLNQEKAKTTQVSEISSLSEITNSTDITGSLDITDITALPELQTM
                     CSKTQRCPCNIMESEDFSEYTDATDVTDVTDVLENEVTDVQDIKIVTEVTEVSEVQIS
                     TNVSGVKIVFENDDIIKNKQEEKDNNLKHRSLRDTKTKNDYRDSPKHVSISNRTLALE
                     DEETFQTTLTPVKSKEDICKEIYDETSEEKMISLQNTHLKATESRSKHSTLERLFRDH
                     LQTLPSVRSQLTSQFPESNLLGVNYSKMSSTGGSTYGSPRPRPPHLYGVIH"
     exon            330..529
                     /gene="Garin2"
                     /gene_synonym="Fam71d"
                     /inference="alignment:Splign:2.1.0"
     exon            530..1064
                     /gene="Garin2"
                     /gene_synonym="Fam71d"
                     /inference="alignment:Splign:2.1.0"
     exon            1065..1303
                     /gene="Garin2"
                     /gene_synonym="Fam71d"
                     /inference="alignment:Splign:2.1.0"
     exon            1304..1515
                     /gene="Garin2"
                     /gene_synonym="Fam71d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagaagcgt gccctttgga aatagctctc ctgtctgaca tccaggaggt ttccagagat
       61 ctgtctcagc agattctatc tacatcatga aaagaaggaa gcccaaactg aagtgagtca
      121 caaacttcat tcccatcaca ggactgtggc ttggccttga ggtgagcatg atgaagaaga
      181 acaagagcaa gagcaagaag ttagtgaata agcaagacgc cctctgcatc ccacactatt
      241 acagactagg acatcttaag aacatattag atggaggaga gtatgcgcct tatgtatccc
      301 ctcccatatt ggagagcaat tttattcagg tcaataggag aggtgaatct atttacctgc
      361 ataaccgagc aaactgggtg accgtaggca tctgttcttc caatcacgtc ttcaagaccc
      421 ccaatatgat gctgttggca cacctgacga cagaagctcg aaaagaacaa gaacccctct
      481 ttaaaaccat tctgaagtct tcctctcctg ggaatctggt gctcaccagg tttatccctc
      541 tacagtttgt gactatttct gtgcacagtg ctaagaacat gcgtctcaag gtaaagctga
      601 tcaacggccg gtcttactac ttacagctct gtgctcctat gtataaacag gatatcatat
      661 tttctcagtg ggtagacctc atccccctct tgaatcagga gaaagctaaa actacccaag
      721 tatcagagat ctcaagcctc tcagagatca caaacagcac agacatcaca ggctcattgg
      781 acatcacaga catcactgct ttaccagaac tgcaaaccat gtgctcgaaa acgcagagat
      841 gcccttgcaa catcatggaa agtgaagact tctccgaata tacagatgcc actgatgtca
      901 cagatgtcac tgatgttctg gaaaatgagg tcacagatgt tcaggatata aaaattgtca
      961 cagaagtcac agaagtctca gaagtccaaa tatccacaaa tgtctcaggg gtcaaaatag
     1021 tatttgaaaa tgacgatata ataaagaaca agcaggagga aaaggacaac aatctgaagc
     1081 acaggagtct acgagataca aaaactaaga atgactaccg agattccccc aaacatgtct
     1141 ccatctcaaa cagaaccctg gctttggaag atgaagaaac ttttcagact actctgactc
     1201 ctgtaaaaag caaggaggac atatgcaaag aaatatatga tgaaacttct gaagaaaaga
     1261 tgatcagtct tcagaacaca catctaaagg ccacagaatc cagatctaaa cactccaccc
     1321 tggagagact cttccgagac catcttcaga cccttccaag tgtgcggtca cagttgactt
     1381 cccagttccc ggagtctaat ctattaggcg ttaactactc caagatgagc tctacaggtg
     1441 gttcaaccta cggcagccca cgaccccgac ctccacattt gtatggggta atacattaaa
     1501 gtcactccgc tcctcaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//
