LOCUS       NM_001024324            1600 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus golgi associated RAB2 interactor 1B (Garin1b),
            mRNA.
ACCESSION   NM_001024324 XM_575416
VERSION     NM_001024324.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1600)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079297.1.
            
            On May 27, 2005 this sequence version replaced XM_575416.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079297.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q22"
     gene            1..1600
                     /gene="Garin1b"
                     /gene_synonym="Fam71f1; Tdrns18l1"
                     /note="golgi associated RAB2 interactor 1B"
                     /db_xref="GeneID:500061"
                     /db_xref="RGD:1564147"
     exon            1..293
                     /gene="Garin1b"
                     /gene_synonym="Fam71f1; Tdrns18l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..1079
                     /gene="Garin1b"
                     /gene_synonym="Fam71f1; Tdrns18l1"
                     /note="protein FAM71F1; family with sequence similarity
                     71, member F1; Golgi associated RAB2 interactor protein
                     1B"
                     /codon_start=1
                     /product="Golgi-associated RAB2 interactor protein 1B"
                     /protein_id="NP_001019495.1"
                     /db_xref="GeneID:500061"
                     /db_xref="RGD:1564147"
                     /translation="MMTSVPPRKTWWKSKKTVKVRRSYSTFPSLNAWEKFRGLLPVDG
                     ETNPGVGLGVEEGLLCQMVHSPEFNLFPNSVVFESNFVQVRRSRDWKEIYKASNTMAL
                     GVTSSVPCLPLPNILLMARVIWHQGQSQTWNRPSTVPSINLKSILPLKFVELQIWDHH
                     ERILRLRTVTEKIYFLKLHPDHPETVFRFWIRLVQILHKGLSITTKDPTILVTHCLVP
                     KSLCSPGGKSELVQKNSKGLQPSESLTHLMAQGESEALSQIFSDLHQQKQYSSSRSEK
                     VQINKTSSEKATPCEDSIPCTCDLNWRDAFMFGEWERENPSGPQPHSLLSTLAASSRP
                     RLSLIGGNSI"
     exon            294..478
                     /gene="Garin1b"
                     /gene_synonym="Fam71f1; Tdrns18l1"
                     /inference="alignment:Splign:2.1.0"
     exon            479..731
                     /gene="Garin1b"
                     /gene_synonym="Fam71f1; Tdrns18l1"
                     /inference="alignment:Splign:2.1.0"
     exon            732..853
                     /gene="Garin1b"
                     /gene_synonym="Fam71f1; Tdrns18l1"
                     /inference="alignment:Splign:2.1.0"
     exon            854..897
                     /gene="Garin1b"
                     /gene_synonym="Fam71f1; Tdrns18l1"
                     /inference="alignment:Splign:2.1.0"
     exon            898..1065
                     /gene="Garin1b"
                     /gene_synonym="Fam71f1; Tdrns18l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1066..1572
                     /gene="Garin1b"
                     /gene_synonym="Fam71f1; Tdrns18l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gatcccagga caactgtgca gagggcccct gagcatgtgc agacatgatg acatcagttc
       61 cacctagaaa gacttggtgg aaatcgaaga agacagtaaa agtgagaaga tcttattcaa
      121 ccttcccttc cttgaatgcc tgggaaaaat tcaggggcct cttgcctgtg gatggggaaa
      181 cgaaccctgg agtgggcctg ggtgtggaag aaggactact ctgccagatg gttcattctc
      241 cagaattcaa tctgtttcct aactctgtgg tgtttgaaag caactttgtc caggtcagaa
      301 ggagcagaga ctggaaagaa atctataagg cttccaacac catggccctt ggggtgacct
      361 cctccgtacc ttgccttccc cttccgaaca tcctccttat ggccagagtc atatggcatc
      421 aggggcagag ccagacatgg aacagaccgt ccacagtgcc aagcatcaac ctgaagagca
      481 ttctcccttt gaagtttgtg gagctccaga tctgggacca ccatgaacgc atcctacggt
      541 tgaggaccgt caccgagaaa atctacttcc taaagctcca ccctgaccat cctgagactg
      601 tcttccgctt ttggatccgc ctggttcaaa ttctgcataa gggtctgtcc atcaccacca
      661 aggaccctac catcctcgtc actcactgcc tggtacccaa gagcctttgc agcccaggtg
      721 ggaagtctga gttagtgcag aagaattcta aaggcctcca gcccagcgag agcctcacac
      781 atctgatggc ccagggggag agcgaggccc tctcccagat cttttccgac ttgcatcagc
      841 agaaacagta cagttccagc aggagtgaaa aggtgcaaat caacaagacc agctcagaga
      901 aagctactcc ctgtgaagac agtatcccct gtacctgcga tctcaattgg agggatgcgt
      961 tcatgttcgg agagtgggaa agagagaacc cctctgggcc acagccccac tcgctcctca
     1021 gtaccctggc tgcctccagc aggccacggc tgtccctaat tggaggaaac tctatatgac
     1081 gcttcctttc cccttgggga gagtttctgt ggcctgcatc agcacttctc ttcagcattc
     1141 agtttcaggg tgctgtatct ggacaaaggg gaggaggaag ttgccagtag gagcaaacca
     1201 gagttatctc agcagcactg acaagagcgc ctcctcatcc tgtcagcgtc tccgtgtgtt
     1261 ctcactacca cctcagaata cagcaacttg taccctgtgg tctagggcga tcacgtagat
     1321 tgggatgcac tgtccaaaag tctggaacct ggagaagagc gattcgaggg aaagcaactc
     1381 cggagaagca gggacatgga agctggtggg agggagtcgg agaagagagg cagaaagaaa
     1441 agaagtaaca caaggaaaca gaagagacct gggagaaaag ctgaagagaa ctagaccgga
     1501 agcacatctc tgagagatgc cccgccaagc gtctatttat ctaatttaaa aagtaaagcc
     1561 ataaaccgag gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
