LOCUS       NM_001024323            1260 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus golgi associated RAB2 interactor 1A (Garin1a),
            mRNA.
ACCESSION   NM_001024323 XM_575415
VERSION     NM_001024323.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1260)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC086566.1.
            
            On May 27, 2005 this sequence version replaced XM_575415.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC086566.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q22"
     gene            1..1260
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; Tdrns18l2"
                     /note="golgi associated RAB2 interactor 1A"
                     /db_xref="GeneID:500060"
                     /db_xref="RGD:1561814"
     exon            1..239
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; Tdrns18l2"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..974
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; Tdrns18l2"
                     /note="testes development-related NYD-SP18-like 2; protein
                     FAM71F2; family with sequence similarity 71, member F2;
                     Golgi associated RAB2 interactor protein 1A"
                     /codon_start=1
                     /product="Golgi-associated RAB2 interactor protein 1A"
                     /protein_id="NP_001019494.1"
                     /db_xref="GeneID:500060"
                     /db_xref="RGD:1561814"
                     /translation="MSKIRGLPPAIRDPGPGVELGVENGLLCQLIHSPEFNLFSDSVV
                     FESTFIQVTKQGNWMDAYERSATIILGVTSSVPSLPLPNILLMANVTWPQGPFSTCST
                     LGAPVITLSRILPLKYVELQIYDRTQRILRVRTVTEKIYYLRLHEKHPQAVFRFWIRL
                     VKILQKGLSITTKDPRIHFTHCLVPKMPNSSTETTPESSRPASSQSSETIMLLAAERA
                     GSSVLDLSNRHRFSEDRYTDTKTDNSSNCKTASPVASLIGMPMRATLIHSLWEQEDSC
                     ETLLQAPVASSLGDNFLGP"
     exon            240..421
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; Tdrns18l2"
                     /inference="alignment:Splign:2.1.0"
     exon            422..671
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; Tdrns18l2"
                     /inference="alignment:Splign:2.1.0"
     exon            672..790
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; Tdrns18l2"
                     /inference="alignment:Splign:2.1.0"
     exon            791..1240
                     /gene="Garin1a"
                     /gene_synonym="Fam71f2; Tdrns18l2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagtggttc caacaacacc ttggagttgg gctgggtctg tgtggagccc cagagatgtg
       61 ccccagccca ttcttcttaa gaatcaatga gtaaaattag gggcctccct cctgcaatca
      121 gggacccagg ccctggagtg gaacttggag tcgaaaatgg ccttctctgt caactgatcc
      181 attctccaga attcaacttg ttctctgact cggtggtgtt tgagagcacc tttatccagg
      241 tcactaagca aggaaactgg atggatgcct acgaaagatc tgccactata atccttggag
      301 taacctcttc agtgccctcc ttgccactcc ccaatatcct cctgatggcc aatgttacct
      361 ggcctcaagg tccattttcc acctgtagca cacttggtgc ccctgtcatc accctcagca
      421 ggattcttcc cctgaagtat gtggagctac aaatctatga ccggacccag cgcatccttc
      481 gggttaggac agtgactgag aagatctact acctgaggct ccatgagaaa catccacagg
      541 ctgtgtttcg gttctggatc cgcttggtga aaatcttaca gaaaggtctg tctatcacca
      601 ccaaagaccc aaggatccat ttcactcact gcctggtgcc caagatgccc aactcctcca
      661 ctgaaacaac acctgaaagc agccggccgg catcctccca gagtagtgag accataatgc
      721 tgctggcggc tgagcgggcc ggcagcagtg tcctagatct ctcaaacaga caccggttct
      781 cagaagacag atacactgat acaaaaacag acaactccag caactgcaag acagcctccc
      841 cggtggcatc tttaattggt atgcccatga gagccacctt gatccacagt ctctgggaac
      901 aagaggactc atgtgagacc ctcctacagg ctcctgtagc cagctcccta ggagacaact
      961 ttttgggacc ctaacacctg gccagaatgg ggtgtcagcc ctgtcttcta tgtgtttgct
     1021 ctgcctccta caatgctgct tcccacagtg ggccaagtaa ccatgggaga gatgaaatgg
     1081 tacctatgcc aagatgctct tctacatcca ccaataaacc tccagtgggg tcctcgttgg
     1141 ttgtgttttg gggaggttct gagcagttgg ggaaggaatg gctagaaatc acagttcatg
     1201 cctcagaaaa ataaatggga aggaagctat gacaccaaaa aaaaaaaaaa aaaaaaaaaa
//
