LOCUS       NM_001145840            4816 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus glucosidase, alpha; neutral C (Ganc), mRNA.
ACCESSION   NM_001145840
VERSION     NM_001145840.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4816)
  AUTHORS   Yasue,M., Serikawa,T. and Yamada,J.
  TITLE     Chromosomal assignments of 23 biochemical loci of the rat by using
            rat x mouse somatic cell hybrids
  JOURNAL   Cytogenet Cell Genet 57 (2-3), 142-148 (1991)
   PUBMED   1914521
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000003.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments, including mouse NM_172672.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.17848.1,
                                           SRR26643295.14910.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1149              JAXUCZ010000003.1  127807132-127808280
            1150-1212           JAXUCZ010000003.1  127809474-127809536
            1213-1321           JAXUCZ010000003.1  127811950-127812058
            1322-1449           JAXUCZ010000003.1  127819481-127819608
            1450-1629           JAXUCZ010000003.1  127822185-127822364
            1630-1675           JAXUCZ010000003.1  127823627-127823672
            1676-1742           JAXUCZ010000003.1  127826835-127826901
            1743-1839           JAXUCZ010000003.1  127827907-127828003
            1840-2020           JAXUCZ010000003.1  127829604-127829784
            2021-2174           JAXUCZ010000003.1  127829990-127830143
            2175-2410           JAXUCZ010000003.1  127832598-127832833
            2411-2537           JAXUCZ010000003.1  127834169-127834295
            2538-2617           JAXUCZ010000003.1  127836262-127836341
            2618-2761           JAXUCZ010000003.1  127837394-127837537
            2762-2858           JAXUCZ010000003.1  127839634-127839730
            2859-2960           JAXUCZ010000003.1  127843290-127843391
            2961-3204           JAXUCZ010000003.1  127845209-127845452
            3205-3269           JAXUCZ010000003.1  127847171-127847235
            3270-3346           JAXUCZ010000003.1  127849223-127849299
            3347-3421           JAXUCZ010000003.1  127850953-127851027
            3422-3535           JAXUCZ010000003.1  127854272-127854385
            3536-3648           JAXUCZ010000003.1  127855629-127855741
            3649-3752           JAXUCZ010000003.1  127856879-127856982
            3753-4816           JAXUCZ010000003.1  127857932-127858995
FEATURES             Location/Qualifiers
     source          1..4816
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q35"
     gene            1..4816
                     /gene="Ganc"
                     /note="glucosidase, alpha; neutral C"
                     /db_xref="GeneID:24382"
                     /db_xref="RGD:2660"
     exon            1..1149
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     CDS             1121..3862
                     /gene="Ganc"
                     /EC_number="3.2.1.20"
                     /note="neutral C"
                     /codon_start=1
                     /product="neutral alpha-glucosidase C"
                     /protein_id="NP_001139312.1"
                     /db_xref="GeneID:24382"
                     /db_xref="RGD:2660"
                     /translation="METPEKKEISVEDEAVDKTIFKDCGKIAFYRRQKQQLSKNTTYR
                     ASLGSVSTEQDSTRFQISSEATKIPLVAEVYGIEKDIFRLKINEETPLKPRYEVPDVV
                     NSKLGTVRLVCSGDTGSLTLTDRKGDLRCHISANPFKIDLLSKDEALISINSLGKLYF
                     EHLRVPHKQRATKGNGQNTPADTFQENQEDLGLWEEKFGKFVDVKVNGPSSVGLDFSL
                     HGFEHLYGIPQHAESHQLKNTRDGDAYRLYNLDVYGYQVHDKMGIYGSVPYLLAHKQG
                     RTVGIFWLNASETLVEINTEPAAEYTLTQMGPAAAKQKVRCRTNVHWMSESGIIDVFL
                     LTGPTPADIFKQYSYITGTQAMPPLFSLGYHQCRWNYEDEQDVKAVDAGFDEHDIPYD
                     VMWLDIEHTEDKKYFTWDKKRFANPKRMQELLRSKGRKLVVISDPHIKVDPDYTVYAE
                     AKERGFFVKNPEGGDLEGVCWPGLSSYLDFTNPKVREWYSSLFAFPVYQGSTDILFLW
                     NDMNEPSVFRGPELTMQKNAVHHGNWEHRELHNIYGFYHQMATAEGLIQRSQGKERPF
                     VLSRSFFAGSQKYGAVWTGDNTAEWSYLKISIPMLLTLSVSGISFCGADVGGFIGNPE
                     AELLVRWYQAAAYQPFFRGHATMNTKRREPWLFGAEYTQLIREAIRERYSLLPYLYSL
                     FYHAHVSSQPVMRPLWVEFPDDLETFAVEDEYMLGNALLVHPVTAPQTTMIDVFLPGS
                     NEVWYNSKTFAYWKGGCAVKVPVTLDTIPVFQRGGSVVPVKTTVGKSTGWMTDSPYGL
                     RVALNTQGSAVGELYLDDGHSFQYLHQNQFLHRKFLFCSSVLTNRCADEKGHYPSKCI
                     VEQILVLGLKKKPSSVTTHSSDGKVQPATFAYCAKTCTLSLKKLSLSVGDDWEVHVS"
     exon            1150..1212
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            1213..1321
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            1322..1449
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            1450..1629
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            1630..1675
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            1676..1742
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            1743..1839
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            1840..2020
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            2021..2174
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            2175..2410
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            2411..2537
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            2538..2617
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            2618..2761
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            2762..2858
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            2859..2960
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            2961..3204
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            3205..3269
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            3270..3346
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            3347..3421
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            3422..3535
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            3536..3648
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            3649..3752
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
     exon            3753..4816
                     /gene="Ganc"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aacactcacc gacggcatcg gtacgtgcca cttggatcta tccgcagcaa acacgggtgc
       61 tggacctgca ccaagaaacg acaatgggaa cggctgcgcc cctaaaagaa gaaaaataac
      121 aggagacacc tgaagccacg cagccaccgc catcttcacg gccatagagc gcctaccaaa
      181 agcattgagc cttcttccgg ctagctagtc ccgccttctt ccggctcgtc ccactctctt
      241 ccggctttgc tctgtgggcg ggattatccg ggtccttgaa actgcggagt tttttccctc
      301 cgaccctccg agcgctccgg taactttgag cctattgcgc aggcgtcttc ctttctcgct
      361 gctatcgtga cctggaggtg aactaccaga gttttgagat ctggtgcttc cctctgttct
      421 tccagccgtt aaaggaactc agtgcgtcgg tcaagtcttt gctcttccaa cttcttcctg
      481 cccctcatcc tttccaaatc aaggtcaggc gccggtgaga cgtctgtaga agcgcgcata
      541 ctggatgcat gattgacatc cagttttgag ttctctggct gtcgagctgc gaaaacagaa
      601 cctagaattt gacagggctg gagtagaaac gattcatgag ctccaaagtc ccgtttgacc
      661 ctgaaagact gtgggtcagc tgcagcatag tttgacaggc aacatcagcg tccagcgtcc
      721 agaggcactc tccacttaaa aagtgaggag agatcagtca ggtcagcttt cggtattgta
      781 gagtgagaca ggcccttatt ggtgcttcct gtttctcaca ctctagattt taacctctag
      841 ggcagcgagc acatcttctc cgccaataaa agcaaggttc atcagccact ctaaaccaag
      901 aaatatttac caagtattat tatccctgca aacacgctgg tttatgcttg agaaagtccc
      961 aggttggggg aaaaaaaaat caagattggc ctctgcctga aggggactgt gatgaagtac
     1021 gggttataat ttagcaagcc tgcttgttac ccggattttt aaagatcgcc tgaagctgtg
     1081 acctgagagt taggagccag gcagagttaa cagggaagcc atggaaacac ctgagaaaaa
     1141 ggaaatcagt gttgaagatg aagcagtgga taaaaccatt ttcaaagact gtggcaagat
     1201 tgcattctac aggcggcaga aacagcagct ctccaagaat accacctacc gggcttcact
     1261 aggctccgtc agcacagaac aggacagcac caggttccaa atcagcagtg aagcaactaa
     1321 gattcctctt gtggctgaag tttatggtat agagaaggac attttcagac ttaagatcaa
     1381 tgaagaaact ccactgaaac caaggtatga agttcctgat gtcgtcaaca gcaagcttgg
     1441 aactgtcagg ctggtctgct caggggacac aggcagcctg acactgacag atagaaaagg
     1501 agatctgaga tgtcatatct cagcaaaccc attcaagatt gatttgttgt ctaaggacga
     1561 ggctctgatc agcatcaact ccctgggcaa gctatacttt gagcacctgc gggttcctca
     1621 caagcagaga gctaccaaag gaaatggaca aaatacacca gctgacacct ttcaggaaaa
     1681 tcaagaggac ctgggcctgt gggaagagaa atttggaaaa tttgtggatg tcaaagttaa
     1741 tggcccttcc tctgttggtt tggatttctc ccttcatgga tttgaacatc tctatggtat
     1801 ccctcaacat gcagagtcac accaacttaa aaatactaga gatggagacg cataccgtct
     1861 ttataaccta gatgtctatg gataccaagt tcatgacaaa atgggcatat atggttcagt
     1921 gccttatctc ctggcccaca aacagggcag gactgtaggt attttctggc tgaacgcctc
     1981 agaaacacta gtggagatca acacagagcc agcagctgag tacacactga cccagatggg
     2041 cccagcagct gccaaacaaa aagtcaggtg ccgaactaat gtgcactgga tgtcagagag
     2101 tgggatcatt gacgtttttc tgctgacagg acctacacct gctgacatct tcaagcagta
     2161 ctcatatatc acaggcacac aagccatgcc ccctcttttt tccctggggt accaccagtg
     2221 tcgctggaac tatgaagatg aacaggatgt gaaggcagtc gatgcagggt ttgatgaaca
     2281 tgacattcca tatgatgtca tgtggctgga catagagcac acggaggaca agaagtactt
     2341 cacctgggac aaaaagagat tcgcaaaccc caaaaggatg caagagctgc tcaggagcaa
     2401 aggacgcaag cttgtggtta tcagtgaccc ccacatcaag gtggatcctg actacacagt
     2461 ctatgctgaa gccaaagaac ggggcttctt tgtgaagaat ccagagggtg gcgacttgga
     2521 aggagtctgt tggcctggtc tctcgtctta cctggacttc accaacccca aggtcagaga
     2581 gtggtattcc agcctttttg cttttcctgt ctatcaggga tctacggaca tccttttcct
     2641 atggaatgac atgaatgagc cctcagtctt cagagggcca gagctaacca tgcagaagaa
     2701 tgctgttcat catggcaact gggaacacag agaacttcac aacatctacg gcttttatca
     2761 ccaaatggct acggcagaag gattgataca gcgatctcag gggaaggaga ggccctttgt
     2821 tctttcgcgt tccttctttg ctggatcaca aaagtatggt gcagtgtgga cgggagacaa
     2881 cacagcagaa tggagctatc tgaaaatctc catccctatg ttacttaccc tcagtgtctc
     2941 agggatctcc ttctgtggag ctgatgtggg cggcttcatt ggcaatcctg aagcagagct
     3001 gctagtgcgc tggtaccagg ctgcagctta ccagcccttc ttccgaggcc atgctaccat
     3061 gaacaccaag cggcgagaac cctggctgtt tggggcagaa tacactcagc tgatccggga
     3121 agccatcaga gagcgctaca gcctcctgcc ctatctgtat tctctgttct accatgcgca
     3181 cgtgtcttct cagcctgtca tgaggcccct gtgggtcgaa tttcctgatg acttagagac
     3241 ttttgctgtg gaagatgaat acatgctagg caatgcttta ttggttcatc cagttacagc
     3301 accacagacc accatgattg atgtcttcct gccagggtca aatgaggtct ggtacaactc
     3361 taagacattt gcatattgga aaggaggatg tgctgtgaag gttccagtaa ccttggatac
     3421 tatcccagtg tttcaacgag gtggaagtgt ggtaccagta aagactactg tggggaagtc
     3481 caccggctgg atgactgact ccccatatgg gctccgagtt gccctaaaca ctcagggttc
     3541 tgctgtggga gagctgtatc tcgatgacgg ccattcattc cagtacctcc accagaacca
     3601 gttcttacac cgcaagttct tattctgctc cagtgttctg accaacaggt gtgctgatga
     3661 gaagggtcat taccccagca agtgcatcgt ggagcagatc ttggtcttag gccttaagaa
     3721 gaagccatct tctgtgacta cccattcttc tgatggtaaa gttcagcctg caacttttgc
     3781 gtactgtgcc aaaacatgta ccctgagtct gaagaagctg tctctgagtg ttggtgatga
     3841 ctgggaggtc catgtcagct gacaagcagg tgccctggta gagtacggga agccacctga
     3901 ccactctgcc ttcttagcct cctgagagcc gtgctgccat ctaatttgct tccctgggga
     3961 aaatgacatt tctcttatct ctagtgtact gatgaccagt aaatttcagg cttaaagatt
     4021 ttagccaggt gcagtagccc actcctgtaa tcccagcact cagaaagctg aagcagaagg
     4081 atcgtgagtt caagaccagc ctaagcaaga cctgtctcaa aaaaaaatca aaaataagat
     4141 ttcagatttt acatttaaag atgtattgtt gaccctctgc acaaacactg ccctccccac
     4201 agccccacaa ttccctgaga cattaaaaga gctcaatgag tggcctgact tggagcaggg
     4261 ctactcaaga gacccgtttg tggggcttgc ttcaggctgt acagcacaca gagtgctgta
     4321 tagcacattc tggctgttgc agcagcagca gagttgccca acccaatatc caagtagata
     4381 gcagtgcctg gtactctgag ggttaccttc tgtcagcagc tgtgtgggtg tggcagccgc
     4441 tgccacagac actgcatggg cagagctgtg gaaaggtctt ctcccctgag agtgactccg
     4501 gaacacaagg ataagatcct ctttcacact tcttagattc aaaactacca aatcaatttt
     4561 caaagtcaga tttatacctt ttaattatac tttattaaat actatctact aactgaagaa
     4621 tatgtataaa gtgaatataa taagctataa ttagtaaaaa atgaaataaa tacccacatc
     4681 ccacaggtga acttcaaaaa tagagcacag gcctgggcct agaatagcac aagtgattgg
     4741 cagttgtctt aggcacgacc aataaccaaa ataagtaata tttcaataca ctgtctttaa
     4801 aaatcaaaat gaatgc
//
