LOCUS       NM_001135756            1959 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus polypeptide
            N-acetylgalactosaminyltransferase-like 6 (Galntl6), mRNA.
ACCESSION   NM_001135756 XM_341429
VERSION     NM_001135756.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1959)
  AUTHORS   Zhang,S., Wang,X., Chen,G., Tong,L., Dai,T., Wang,L., Zhu,L.,
            Zhang,H. and Du,D.
  TITLE     CircRNA Galntl6 sponges miR-335 to ameliorate stress-induced
            hypertension through upregulating Lig3 in rostral ventrolateral
            medulla
  JOURNAL   Redox Biol 64, 102782 (2023)
   PUBMED   37315345
  REMARK    GeneRIF: CircRNA Galntl6 sponges miR-335 to ameliorate
            stress-induced hypertension through upregulating Lig3 in rostral
            ventrolateral medulla.
REFERENCE   2  (bases 1 to 1959)
  AUTHORS   Raman,J., Guan,Y., Perrine,C.L., Gerken,T.A. and Tabak,L.A.
  TITLE     UDP-N-acetyl-alpha-D-galactosamine:polypeptide
            N-acetylgalactosaminyltransferases: completion of the family tree
  JOURNAL   Glycobiology 22 (6), 768-777 (2012)
   PUBMED   22186971
  REMARK    Erratum:[Glycobiology. 2015 Apr;25(4):465. doi:
            10.1093/glycob/cwv003. PMID: 25715345]
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            [WARNING] On Mar 17, 2025 this sequence was replaced by
            NM_001135756.2.
            
            On Oct 10, 2008 this sequence version replaced XM_341429.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.968194.1,
                                           SRR26360176.61016.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMN12840105
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-291               JAXUCZ010000016.1  36205082-36205372
            292-400             JAXUCZ010000016.1  36643590-36643698
            401-539             JAXUCZ010000016.1  36732375-36732513
            540-706             JAXUCZ010000016.1  36772016-36772182
            707-892             JAXUCZ010000016.1  37231236-37231421
            893-1076            JAXUCZ010000016.1  37235180-37235363
            1077-1194           JAXUCZ010000016.1  37313228-37313345
            1195-1302           JAXUCZ010000016.1  37354251-37354358
            1303-1524           JAXUCZ010000016.1  37384920-37385141
            1525-1641           JAXUCZ010000016.1  37424509-37424625
            1642-1791           JAXUCZ010000016.1  37434326-37434475
            1792-1959           JAXUCZ010000016.1  37451503-37451670
FEATURES             Location/Qualifiers
     source          1..1959
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p12-p11"
     gene            1..1959
                     /gene="Galntl6"
                     /gene_synonym="Galnt17; RGD1564773"
                     /note="polypeptide N-acetylgalactosaminyltransferase-like
                     6"
                     /db_xref="GeneID:361142"
                     /db_xref="RGD:1564773"
     exon            1..291
                     /gene="Galntl6"
                     /gene_synonym="Galnt17; RGD1564773"
                     /inference="alignment:Splign:2.1.0"
     CDS             154..1959
                     /gene="Galntl6"
                     /gene_synonym="Galnt17; RGD1564773"
                     /EC_number="2.4.1.41"
                     /note="polypeptide N-acetylgalactosaminyltransferase 17;
                     UDP-N-acetyl-alpha-D-galactosamine:polypeptide
                     N-acetylgalactosaminyltransferase-like 6"
                     /codon_start=1
                     /product="polypeptide
                     N-acetylgalactosaminyltransferase-like 6"
                     /protein_id="NP_001129228.1"
                     /db_xref="GeneID:361142"
                     /db_xref="RGD:1564773"
                     /translation="MKRKQKRFLQMTLLFTVALIFLPNIGLWSLYKDKHLMKSAEPAE
                     HQTFPLGLGDGQFYSWTDGLRRKDWHDYVSIQKDALRSGKGEHGKPYPLTEEDHDDSA
                     YRENGFNIFVSNNIALERSLPDIRHANCKHKMYLERLPNTSIIIPFHNEGWTSLLRTI
                     HSIINRTPESLIAEIILVDDFSDREHLKDKLEDYMARFPIVRIVRTKKREGLIRTRLL
                     GASVARGEVLTFLDSHCEVNVNWLPPLLNQIALNHKTIVCPMIDVIDHSHFGYEAQAG
                     DAMRGAFDWEMYYKRIPIPPELQRADPSEPFESPVMAGGLFAVDRKWFWELGGYDPGL
                     EIWGGEQYEISFKVWMCGGEMFDVPCSRVGHIYRKYVPYKVPSGTSLARNLKRVAETW
                     MDEFAEYIYQRRPEYRHLSTGDISAQKELRKRLKCKDFKWFMAAVAWDVPKYYPPVEP
                     LPAAWGEIRNVAANLCVDSKHGAMGTELRLDICVKDGSERTWSHEQLFTFGWREDIRP
                     GEPLHTRKFCLDAISHSSPVTLYDCHGMKGNQLWGYREDRTLFHPVSNSCMDCNPAEK
                     KVFMARCDPLSETQQWMFEHINMTVLEKISHYAIS"
     exon            292..400
                     /gene="Galntl6"
                     /gene_synonym="Galnt17; RGD1564773"
                     /inference="alignment:Splign:2.1.0"
     exon            401..539
                     /gene="Galntl6"
                     /gene_synonym="Galnt17; RGD1564773"
                     /inference="alignment:Splign:2.1.0"
     exon            540..706
                     /gene="Galntl6"
                     /gene_synonym="Galnt17; RGD1564773"
                     /inference="alignment:Splign:2.1.0"
     exon            707..892
                     /gene="Galntl6"
                     /gene_synonym="Galnt17; RGD1564773"
                     /inference="alignment:Splign:2.1.0"
     exon            893..1076
                     /gene="Galntl6"
                     /gene_synonym="Galnt17; RGD1564773"
                     /inference="alignment:Splign:2.1.0"
     exon            1077..1194
                     /gene="Galntl6"
                     /gene_synonym="Galnt17; RGD1564773"
                     /inference="alignment:Splign:2.1.0"
     exon            1195..1302
                     /gene="Galntl6"
                     /gene_synonym="Galnt17; RGD1564773"
                     /inference="alignment:Splign:2.1.0"
     exon            1303..1524
                     /gene="Galntl6"
                     /gene_synonym="Galnt17; RGD1564773"
                     /inference="alignment:Splign:2.1.0"
     exon            1525..1641
                     /gene="Galntl6"
                     /gene_synonym="Galnt17; RGD1564773"
                     /inference="alignment:Splign:2.1.0"
     exon            1642..1791
                     /gene="Galntl6"
                     /gene_synonym="Galnt17; RGD1564773"
                     /inference="alignment:Splign:2.1.0"
     exon            1792..1959
                     /gene="Galntl6"
                     /gene_synonym="Galnt17; RGD1564773"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaccctgca gattggtgct gagcacacaa caaaagtttg tagcttcccc tcagtttctg
       61 gtgcttcccg ggaaagagga aaggactttg gcattaaaca caagaagcag tctgggagtc
      121 atctctaact tttctccact gttatcattt gcaatgaaga ggaaacagaa aaggtttctg
      181 caaatgactt tgttattcac tgtggcttta attttcctgc ccaacattgg tctctggtct
      241 ttgtacaagg ataaacatct gatgaaatct gcagaacccg cggaacatca gacatttcca
      301 ctgggcctag gcgatgggca attctattcc tggacagatg gtctgagaag aaaagactgg
      361 catgactatg tgagcattca gaaagatgct ttgcgctcag ggaaaggtga gcatggaaaa
      421 ccataccccc ttactgaaga ggaccatgat gactcagctt acagggaaaa tggcttcaat
      481 atttttgtca gcaacaatat tgctctagag aggtctctgc cagacatccg ccatgctaac
      541 tgtaagcaca agatgtacct tgaaaggctg ccaaacacca gcatcattat cccatttcac
      601 aatgaaggct ggacctcact cttgcggacc atacacagta taatcaaccg gacaccggag
      661 agtctgatag cagaaataat tctagtcgat gacttcagtg atagagaaca cttgaaagat
      721 aaattagaag attacatggc tcgatttccc atagtgagaa ttgtgcgcac caagaaaagg
      781 gagggactca tccggacccg actcctggga gcttctgtgg ccagaggcga ggtgctgacc
      841 ttcctggact cccattgtga ggtcaatgtg aactggctgc cccctctcct caaccaaatt
      901 gcactaaacc acaaaaccat cgtgtgtccc atgatcgatg tcattgacca cagtcacttt
      961 gggtacgagg cacaagctgg ggatgccatg cgaggagcct tcgactggga aatgtactac
     1021 aaaagaatcc ccatccctcc agagctccag cgggctgatc ccagcgagcc ttttgagtct
     1081 cctgttatgg ctggaggtct ctttgcagtg gatcgaaagt ggttttggga actgggtggc
     1141 tatgacccag gcttagaaat ctggggagga gagcagtatg aaatctcttt taaggtttgg
     1201 atgtgcggag gagaaatgtt cgatgttcca tgttctagag tcggtcatat ctacaggaag
     1261 tatgtccctt ataaagttcc gtctgggact agcctggcaa ggaacctgaa gcgcgtggct
     1321 gagacctgga tggatgaatt tgctgagtac atttaccagc ggcggccaga gtacaggcac
     1381 ctctccaccg gagacatctc tgcccagaag gagttgcgga aacgacttaa gtgcaaagac
     1441 ttcaaatggt tcatggctgc ggtggcctgg gatgtgccga agtactaccc tccggtcgag
     1501 cccctgcctg cggcatgggg tgagattcga aatgtggcag caaacttatg tgtggatagc
     1561 aagcatggag ccatggggac cgaactgagg ctggacatct gtgtgaagga tggttccgaa
     1621 aggacatggt ctcacgaaca gctctttact ttcgggtgga gagaagatat tcgacctggt
     1681 gagcctctgc acacccgaaa attctgcttg gatgccatct cacacagcag ccctgtcacc
     1741 ctctacgact gtcacggcat gaaaggcaac cagctctggg gataccggga ggacagaaca
     1801 ttattccatc ccgtgagcaa cagctgtatg gactgcaacc ctgcagagaa gaaggttttc
     1861 atggccagat gtgaccctct gtccgagact cagcagtgga tgtttgaaca catcaacatg
     1921 actgttttag aaaaaattag ccattatgcc atctcctag
//
