LOCUS       NM_001122644            2858 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus polypeptide N-acetylgalactosaminyltransferase 9
            (Galnt9), transcript variant A, mRNA.
ACCESSION   NM_001122644
VERSION     NM_001122644.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2858)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000012.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.51222.1,
                                           SRR26643298.81475.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-554               JAXUCZ010000012.1  51787777-51788330   c
            555-735             JAXUCZ010000012.1  51753738-51753918   c
            736-902             JAXUCZ010000012.1  51743360-51743526   c
            903-1077            JAXUCZ010000012.1  51741766-51741940   c
            1078-1275           JAXUCZ010000012.1  51735582-51735779   c
            1276-1393           JAXUCZ010000012.1  51728634-51728751   c
            1394-1579           JAXUCZ010000012.1  51717342-51717527   c
            1580-1717           JAXUCZ010000012.1  51715721-51715858   c
            1718-1813           JAXUCZ010000012.1  51713189-51713284   c
            1814-1981           JAXUCZ010000012.1  51712120-51712287   c
            1982-2858           JAXUCZ010000012.1  51710180-51711056   c
FEATURES             Location/Qualifiers
     source          1..2858
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..2858
                     /gene="Galnt9"
                     /note="polypeptide N-acetylgalactosaminyltransferase 9"
                     /db_xref="GeneID:304571"
                     /db_xref="RGD:1311523"
     exon            1..554
                     /gene="Galnt9"
                     /inference="alignment:Splign:2.1.0"
     CDS             314..2128
                     /gene="Galnt9"
                     /EC_number="2.4.1.41"
                     /note="isoform A is encoded by transcript variant A;
                     UDP-N-acetyl-alpha-D-galactosamine:polypeptide
                     N-acetylgalactosaminyltransferase 9"
                     /codon_start=1
                     /product="polypeptide N-acetylgalactosaminyltransferase 9
                     isoform A"
                     /protein_id="NP_001116116.1"
                     /db_xref="GeneID:304571"
                     /db_xref="RGD:1311523"
                     /translation="MAVARKIKTLLTVNILVFVGIILFSVYCRLQDRSEALVQVVRGA
                     DRRMRNRLSKASALTDREAILQRLDHLEEVVYNQLNGLAKPIGLVEGPGGLGQGGVAA
                     TLQDDSQETEGKFEDFGYNAQLSDRISLDRTIPDYRPKRCRQITYSEDLPQISVVFIF
                     VNEALSVILRSVHSVVNHTPSQLLKEIILVDDNSDNVELKFNLDQYVHKRYPGLVKVV
                     RNSRREGLIRARLQGWKVATAPIVGFFDAHVEFNTGWAEPALARIQEDRRRIILPAID
                     NIKYSTFEVQQYASAAHGYNWGLWCMYIIPPQDWLDRGDESAPIRTPAMIGCSFVVDR
                     EYFGDIGLLDPGMEVYGAENIELGMRVWQCGGSMEVLPCSRVAHIERTKKPYNNDIDY
                     YAKRNALRAAEVWMDDFKSHVYMAWNIPMTNPGVDFGDVSERLALRQKLKCRSFKWYL
                     ENVYPEMRIYNNTLTYGEVRNSKASGYCLDQGAEDDDRAILYPCHGMSSQLVRYSADG
                     LLQLGPLGSTAFLPDSKCLVDDGRGRMPTLKKCEDVARPTQRLWDFTQSGPIVSRDTG
                     RCLEVEMSKDANFGLRLVVQRCSGQKWMIRNWIKHAKP"
     exon            555..735
                     /gene="Galnt9"
                     /inference="alignment:Splign:2.1.0"
     exon            736..902
                     /gene="Galnt9"
                     /inference="alignment:Splign:2.1.0"
     exon            903..1077
                     /gene="Galnt9"
                     /inference="alignment:Splign:2.1.0"
     exon            1078..1275
                     /gene="Galnt9"
                     /inference="alignment:Splign:2.1.0"
     exon            1276..1393
                     /gene="Galnt9"
                     /inference="alignment:Splign:2.1.0"
     exon            1394..1579
                     /gene="Galnt9"
                     /inference="alignment:Splign:2.1.0"
     exon            1580..1717
                     /gene="Galnt9"
                     /inference="alignment:Splign:2.1.0"
     exon            1718..1813
                     /gene="Galnt9"
                     /inference="alignment:Splign:2.1.0"
     exon            1814..1981
                     /gene="Galnt9"
                     /inference="alignment:Splign:2.1.0"
     exon            1982..2858
                     /gene="Galnt9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcgcgcag gaacgggacg cagcagccaa ggcctcgcgc tgccttctgg cccagaaagc
       61 tcccggcggg cgggccctgc tgactatgcg ggcggcgccc tgtgcccgca tcccacggcg
      121 gtttctgcgc gctggagaag aagggcgggt cgcggcggcc tggagcgtgg agcccgcgcg
      181 gcggtgctga aagaacagct cccgcccttg cccggcccat ggtccccatc gcggccggcc
      241 gctcccaggc tcctgcggcc ccggggcccc ggggatgccc ggcgggtgag gcggcccggt
      301 ccgagccgcg ctcatggcgg tggccaggaa gatcaaaact ttgctgacgg tcaacatcct
      361 ggtgttcgtg ggcatcattc tcttctcggt gtactgccgc ctgcaggacc gttctgaggc
      421 gctggtgcag gtcgtgcgag gcgctgatcg ccggatgcgc aatcggctct ccaaggcgag
      481 tgctctgact gaccgtgagg ccatcctaca gcgcctggac catttggagg aggttgtcta
      541 caaccagctg aatggccttg caaagcccat tgggctggtg gaggggccag gtggcctggg
      601 ccagggagga gtggctgcca ctctgcaaga tgacagccaa gagaccgagg gcaagttcga
      661 ggactttggg tacaatgcac agctcagtga ccgcatctcc ctggatagga ccatccctga
      721 ctacaggccc aagaggtgcc gacagataac gtattctgaa gacctgcccc agatctctgt
      781 ggtcttcatc tttgtcaacg aggcactttc agtcatcctg cgttctgtac acagtgtggt
      841 caaccacaca ccgtcccagc tcctgaagga aatcatcctg gtggatgaca atagcgacaa
      901 tgtggaactc aagttcaatc tggaccagta tgttcacaaa aggtacccag gcctcgtgaa
      961 ggttgtgcgt aacagccgtc gggaaggcct gatccgtgcc cggctgcagg ggtggaaggt
     1021 ggccacggct cccatcgttg gcttctttga tgcccacgtg gagttcaaca ctggctgggc
     1081 tgagcccgcc cttgcacgga tccaggagga ccgccgacgc atcatcctgc cagccatcga
     1141 caacatcaag tacagcacat ttgaggtgca gcagtacgcc agcgctgccc acggctacaa
     1201 ctggggcctg tggtgcatgt acatcatccc tccgcaggac tggctggacc gaggtgacga
     1261 gtcagcaccc atcaggacac ccgccatgat tggctgttca tttgtggtgg accgggagta
     1321 cttcggggac attggcctcc tggacccagg catggaggtg tatggtgcag agaacatcga
     1381 actggggatg cgggtgtggc agtgtggtgg cagcatggag gtactcccct gctcccgtgt
     1441 ggcccacatt gagcgtacca aaaagccata taacaatgac atcgactact acgccaagcg
     1501 taacgcgctg agggccgccg aggtgtggat ggatgatttt aagtcccacg tctacatggc
     1561 atggaatatc cccatgacaa acccaggagt ggactttggg gatgtgtctg agaggctggc
     1621 cctgcgtcag aagttaaaat gccgtagctt caaatggtac ctggagaacg tgtaccccga
     1681 gatgaggatc tacaacaaca ccctcacgta cggagaggtg agaaacagca aagccagcgg
     1741 ctactgcttg gaccaggggg cagaagacga tgaccgagcc attctttacc cttgccatgg
     1801 catgtcctca cagctggtgc gctacagtgc tgatggcctc ctgcagctgg gccccctggg
     1861 ctctaccgcc tttctgccag actccaagtg cctggtagat gacggccggg gacgcatgcc
     1921 caccctaaag aagtgtgagg atgtagccag gcctacgcag agactgtggg acttcaccca
     1981 gagtggcccc attgtgagcc gagacacagg tcggtgtctg gaggtagaga tgtctaaaga
     2041 tgccaacttt gggctgaggt tggtggtgca gcgctgctca gggcagaagt ggatgatccg
     2101 aaactggatc aaacacgcca agccctgact tctgcacccc tcctggacca cctccacaca
     2161 ttcaggccct tggactcttg aatgttccag gactcagaag gtcctggggt ggagccagga
     2221 tgggaacgtc ttgcccaccc ccacagaccc aagagcaatg tgggccctgc acacctcagg
     2281 gctgggccct gtcaccaggg atatccaaga cagctccggc ctgtattagg aaccaaactt
     2341 ttgtggaaca ggcagctctg cctgagggag gacatctgag gacagcgcac actcatgcca
     2401 aatcacgtgc cttttctaca gtgttcccca accggcttcg aggatagcca ccacgcatgt
     2461 gctaagtccc tgtacataac ccatatggaa acagactcag ctattcagtg ctgagggcag
     2521 ggggtgcatc ctcacaacaa gcaccctgtc ctagcaggtt agggcctctc agctcagctg
     2581 ctctcgctca cctgctcaac ctcaccataa cacagggcaa actttgaggg tggccgcttg
     2641 tgttctggta acaaggcaat gggaagtgat cacagggatg agacccagct cacctttctt
     2701 cccaagggtc agcttggcag tcactgggtg ggagtggggg gggagtctca gcctgggaag
     2761 tgagtctcct gttgttctgc catttctaca gcaggcatcc gtcaaatgat ccccccaacc
     2821 ccacacttgt tttataaata aagttttact ggcacaca
//
