LOCUS       XM_039109077            4515 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus polypeptide
            N-acetylgalactosaminyltransferase 8 (Galnt8), mRNA.
ACCESSION   XM_039109077
VERSION     XM_039109077.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 25% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-46                JACYVU010000150.1  2449163-2449208     c
            47-315              JACYVU010000150.1  2447381-2447649     c
            316-459             JACYVU010000150.1  2445299-2445442     c
            460-587             JACYVU010000150.1  2443060-2443187     c
            588-638             JACYVU010000150.1  2439437-2439487     c
            639-873             JACYVU010000150.1  2437697-2437931     c
            874-989             JACYVU010000150.1  2437580-2437695     c
            990-1068            JACYVU010000150.1  2437076-2437154     c
            1069-1334           JACYVU010000150.1  2436665-2436930     c
            1335-1533           JACYVU010000150.1  2436032-2436230     c
            1534-1605           JACYVU010000150.1  2428724-2428795     c
            1606-4515           JACYVU010000150.1  2425319-2428228     c
FEATURES             Location/Qualifiers
     source          1..4515
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4515
                     /gene="Galnt8"
                     /note="polypeptide N-acetylgalactosaminyltransferase 8;
                     The sequence of the model RefSeq transcript was modified
                     relative to its source genomic sequence to represent the
                     inferred CDS: deleted 1 base in 1 codon; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 83% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:103690194"
                     /db_xref="RGD:9174049"
     CDS             1..1752
                     /gene="Galnt8"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: probable polypeptide
                     N-acetylgalactosaminyltransferase 8"
                     /protein_id="XP_038965005.1"
                     /db_xref="GeneID:103690194"
                     /db_xref="RGD:9174049"
                     /translation="MAAHTYNPSPSKAARCFKRLLGFSVHSKICQQWGKGLSEAQQRE
                     AQDLFLEFGCSVFLSNQMPYNGSIPDTHNARCTGPQCSLVMNFGSHAKERVDRGLSYI
                     SSCIACTEEVLSWNANIREAQQLCSLPAMFLSFVSAYRIPCHAALCNLGPWEAPPIIE
                     RRHHQHHQPTPPQLLKIILVDDISSHGEDPEGRRRSFQYPKKKLSEIYDGDPRMSWGK
                     ALAYAICTLSQRSGAACRTVASPTGQCRTVYNFCIASIFLHAGLCWGGVWLGGELKDE
                     KFQVYNQNYPILLRCLIRHTKRRGLAHDPNTGLEAATADVVAILDAPVDVNIGWTQNK
                     DYMDSVESHARERETPFGNMDNFLPSLSKNGLHMTVRLIRASLSAPAHCGATVGLTVL
                     SSFRAPVSDDINFDTFELKKDALAADGFVWKLWYHYDPSPRAWIDLGDASVPIRSPSF
                     VGIVATNRIFLEEIGALDGGMLLCGGQNVGLGLRGEYFPSSLWVKAEGDVTKALRIWE
                     SYSTFASRKELWEKLKCKTFDWYLKIVMKNSLDGSVCLDGGPAPGNSPRMEPCHDFTV
                     QVSPSHQHPSPKVVGLH"
ORIGIN      
        1 atggcggctc acacctataa ccccagccct agtaaagcag ccagatgttt caaaagactt
       61 ctgggattct cagtgcactc gaagatctgc cagcaatggg gcaaggggct ttctgaggct
      121 cagcagagag aggcccagga cttgttcctg gagtttggtt gcagcgtgtt cctcagcaac
      181 cagatgccct ataatggcag catccctgac acccacaatg ccaggtgcac tgggcctcag
      241 tgtagtttgg tgatgaactt tggaagccac gcaaaggaaa gggtagacag ggggttgagc
      301 tacataagtt catgtattgc ttgcactgag gaagttctat cctggaatgc taacatcagg
      361 gaagcccagc agctctgctc cctacccgct atgttcctgt cctttgtgtc tgcttacaga
      421 atcccatgtc atgctgctct ctgtaacctt ggcccctggg aagccccgcc catcattgag
      481 aggcgccatc accagcatca tcaaccgacc ccaccccagc tgctgaagat catcctggtg
      541 gatgacatca gctcccatgg ggaggatcct gagggaagga ggagaagttt ccagtaccca
      601 aaaaagaagc tctcagaaat ctatgatggt gaccccagaa tgtcttgggg gaaggcactg
      661 gcatatgcta tctgtaccct cagtcaacgt tctggagctg cttgccgcac agtggcatca
      721 cccacaggcc agtgcaggac tgtatacaat ttctgcatcg catccatttt tttgcatgca
      781 gggctctgct ggggtggtgt ctggttggga ggagaactga aggatgagaa gtttcaggtt
      841 tacaaccaga actatccaat cctattgaga tgtcttataa ggcacacaaa gagaagaggt
      901 cttgcacacg acccaaacac tggcctggaa gctgctacag ctgacgtggt ggccatcttg
      961 gatgctccag ttgatgtgaa cattgggtgg acacagaata aagattacat ggacagtgtg
     1021 gagagtcatg caagagagag agagacacca tttggaaaca tggataattt cctgcccagc
     1081 ttaagtaaga atggccttca catgacagtg aggttgataa gagcgtctct ctctgctccc
     1141 gcccactgcg gtgccactgt tgggcttact gtattgtctt cttttagggc tcctgtgtct
     1201 gatgatatta attttgatac atttgaactg aaaaaggatg cgctggcagc agatgggttt
     1261 gtgtggaagc tgtggtacca ctatgatcct agccctcgag cctggattga tctgggtgat
     1321 gcctctgttc cgatcaggag tccttccttt gtaggcatcg tggccaccaa caggatcttc
     1381 ttggaagaga tcggggctct ggatggtggg atgctgctct gtggaggtca gaatgtggga
     1441 cttggcctga ggggtgagta ctttccatcc tctttgtggg tcaaagcaga gggagacgta
     1501 acgaaagccc taagaatttg ggaatcctac agcacatttg cttccagaaa ggaactctgg
     1561 gagaaactga aatgcaaaac ttttgactgg tacctgaaga ttgttatgaa aaactcactg
     1621 gatggaagtg tttgcctgga cggaggacct gcgccaggca attctcccag aatggaacct
     1681 tgccacgact tcactgtaca ggtatctccc tcccaccagc atccttctcc aaaggtagtg
     1741 ggtcttcact gacccagggc tacaggttag agtttactta ctgttagagg atggcgaagg
     1801 ccggaagcga gcattcaagc attcggggtg atgtgtaagc atgtatttaa agagtgcagt
     1861 cgtgacaggg aggccgcagg ggagggagac caggcaggca agctctgttt tatgatattc
     1921 attctcccgg tgacaatttt attggctgtc accctccacc ccccaaccac ttcttttcct
     1981 ctaatctcat ggctatgtca ttcattctgc tgatgtgtgc cttggaagct ggccatgcaa
     2041 gaccatctat gctctggcaa agagagggag aaggaatgtc cctgcatggg ttggaagaga
     2101 tacgacacca cacagagctt gttcttatag gattctgtct tgagaataca gacatatttt
     2161 atattacctt gcgttaaaaa atttattctt ctttcctaca tccctactgc agttcccttc
     2221 cctccactcc tcccagctcc ccctgcacct ttccctcaga tccactgctc ctttgtttcc
     2281 cttcctaaaa cagtaggcct cccagggcta tccaccaaac atggcctaac aagatacaat
     2341 gagaccaggc atcaaacctc atatcaaggc tggacgaggc aacccagtag gaggaaaggg
     2401 tcccaagagc aggccagagt actcactttg ctttttaaaa aatgtgttta aagatctatt
     2461 tattccatgt gtatgagtgt cttggctaca tacatgtagg ggcactgcat gagtgtctgg
     2521 tgctcacaga ggtcagaaga gggcataggg tcctcctgca actatagtta cagatggttg
     2581 tgagccgcca tgtggattct ggaagtggaa gccaggtcct ctgcaagagc agccagtgct
     2641 cctaactgcc gagccatctc tccagctttg ccacccaaac tctcctaccc acctccttcc
     2701 aagtgttgag cctacaagtg aataccaact ctcttggtta tgaaatacca gcttcctgca
     2761 ttctaggcaa ggacttcctc cgtgagtaac attgctggct atctttttac tttacatgtt
     2821 gctcttgcag agacgtttag ggggtacctg ctctacccta gccacagaac agttgggaac
     2881 ctgagtcaca aagactcatc caaatgaagg ctatgtcagg ccggggattc gaaggaagcc
     2941 tgcttccctg tgatcagcat cacttgggct tctgttggtg gtctcttagc ttccgttgag
     3001 agaattcttc aaagatgagt tacagctctc atccatgcaa gctcggattc tttgaggcag
     3061 cgttaatcag ctattcactg ctgtcgcaga acacccgtga ccaacaactt aggctcaaaa
     3121 gctttatttt ggctcgaggc ttcagtccat ggatgcgtgt ttccattgtt ccggtctctg
     3181 tgagttttct ctagttccgg ctgctccagg ggcttatgtc ttaggcttcc ccggtgggac
     3241 cacgctgtcc cctgggggag atgccaaatt gcctgtgatc ctgtctccga acacctaccc
     3301 actgtattag cctcaggggc cgtatttcaa gaaacataga caattaactt tttataaaaa
     3361 aaaatttaga tattctcatt ctgtagttca gcttggccca gaactcaaga tccttctgcc
     3421 tcagcgtcca gagagttgga atgtgcacca acctcccctc tcagctagca aatacatttt
     3481 acacttgatc tcagccaaag ggtcaagaag ccatagcaaa tgacttttaa aaactattta
     3541 tttaaattta ttttatttta atttatcaac aaatgtcaga tcatcttgag ttgagggtac
     3601 tagtggttgt gaactaccca acagaggttc tggggaccaa acttgatctc tgcaaaaacc
     3661 agccagggct cttacaccct gagccatccc tccagctcct caactgacag cttaaagcca
     3721 aaggtttaaa aaattttttt ttgttgcttt gttttatttt taagaatttt ctgctagcta
     3781 tggagaacgc ttcagggaaa atatgtgcaa aacaggttca gaggttttcc agtctccctg
     3841 gtctagataa tattgattat gaggaggagg gaaaggaagg gaaggaagag gcttggaaac
     3901 aaaaagcatg ggtgtggcag aggaacacag ctttgttaac actcagagag tggtcaatct
     3961 cccttatgcc ctgtgcaggc attgtccttc ccactccctc ctccccagga tcagacagtg
     4021 tttcctggag ggagccttct gtgacccacg ggagtaggcg gtccttctga acactcttag
     4081 ggctccctta gtccttgttc cactctctcc tagaacaaca gtcacttgag ctttgccttt
     4141 tgaagatata atctcgcttc gtgacactcc ttagccttca ttcctcaccc gcctctttct
     4201 accacagagc tgcagccggt aagaccaggg ctgaaggacc ctagttcttg ctgaagcgta
     4261 agggctatca agaggcttgg cctggtagaa agtaggtagg ttatggggtt catgtgaagg
     4321 accctagggg ctttcgacag ccttacaccc actgcctcag gtcaagatta ggccagatat
     4381 cagcttcctg actctgatca aggctgggcc aagttccatt ctctacccac agttctcggg
     4441 aggagcagga acattcttga aaaaccgcag actgtactga cttatagtca cctgaccctc
     4501 tggtcccaga tagag
//
