LOCUS       NM_022926               2203 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus polypeptide N-acetylgalactosaminyltransferase 7
            (Galnt7), mRNA.
ACCESSION   NM_022926
VERSION     NM_022926.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2203)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   2  (bases 1 to 2203)
  AUTHORS   Ten Hagen,K.G., Bedi,G.S., Tetaert,D., Kingsley,P.D., Hagen,F.K.,
            Balys,M.M., Beres,T.M., Degand,P. and Tabak,L.A.
  TITLE     Cloning and characterization of a ninth member of the
            UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase family,
            ppGaNTase-T9
  JOURNAL   J Biol Chem 276 (20), 17395-17404 (2001)
   PUBMED   11278534
REFERENCE   3  (bases 1 to 2203)
  AUTHORS   Ten Hagen,K.G., Tetaert,D., Hagen,F.K., Richet,C., Beres,T.M.,
            Gagnon,J., Balys,M.M., VanWuyckhuyse,B., Bedi,G.S., Degand,P. and
            Tabak,L.A.
  TITLE     Characterization of a UDP-GalNAc:polypeptide
            N-acetylgalactosaminyltransferase that displays glycopeptide
            N-acetylgalactosaminyltransferase activity
  JOURNAL   J Biol Chem 274 (39), 27867-27874 (1999)
   PUBMED   10488133
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Nov 26, 2020 this sequence version replaced NM_022926.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF076167.1, SRR26643288.55632.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-178               JAXUCZ010000016.1  37589422-37589599
            179-639             JAXUCZ010000016.1  37655717-37656177
            640-806             JAXUCZ010000016.1  37686614-37686780
            807-937             JAXUCZ010000016.1  37691988-37692118
            938-1017            JAXUCZ010000016.1  37692384-37692463
            1018-1200           JAXUCZ010000016.1  37694592-37694774
            1201-1318           JAXUCZ010000016.1  37697241-37697358
            1319-1441           JAXUCZ010000016.1  37698998-37699120
            1442-1660           JAXUCZ010000016.1  37700417-37700635
            1661-1759           JAXUCZ010000016.1  37704923-37705021
            1760-1888           JAXUCZ010000016.1  37706399-37706527
            1889-2203           JAXUCZ010000016.1  37711317-37711631
FEATURES             Location/Qualifiers
     source          1..2203
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p11"
     gene            1..2203
                     /gene="Galnt7"
                     /note="polypeptide N-acetylgalactosaminyltransferase 7"
                     /db_xref="GeneID:29750"
                     /db_xref="RGD:620362"
     exon            1..178
                     /gene="Galnt7"
                     /inference="alignment:Splign:2.1.0"
     CDS             53..2026
                     /gene="Galnt7"
                     /EC_number="2.4.1.41"
                     /note="galNAc-T7; pp-GaNTase 7; polypeptide GalNAc
                     transferase 7; protein-UDP acetylgalactosaminyltransferase
                     7; UDP-GalNAc:polypeptide
                     N-acetylgalactosaminyltransferase 7;
                     UDP-N-acetyl-alpha-D-galactosamine:polypeptide
                     N-acetylgalactosaminyltransferase 7 (GalNAc-T7)"
                     /codon_start=1
                     /product="N-acetylgalactosaminyltransferase 7"
                     /protein_id="NP_075215.1"
                     /db_xref="GeneID:29750"
                     /db_xref="RGD:620362"
                     /translation="MRLKIGFILRSLLVVGSFLGLVVLWSSLSSRPDDPSPLSRMRED
                     RDVNNPLPNRGGNGLAPGDDRFKPVVPWPHVEGVEVDLESIRRKNKAKNEQERHAGGD
                     SQKDIMQRQYLTFKPQTFTYRDPVLRPGVLGNFEPKEPEPHGVVGGPGENAKPLVLGP
                     EYKQAAQASIKEFGFNMAASDMISLDRSVNDLRQEECKYWHYDENLLTSSVVIVFHNE
                     GWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKEKLTEYIKLWNGLVKVFRNER
                     REGLIQARSIGAQKAKLGQVLIYLDAHCEVAVNWYAPLVAPISKDRTICTVPIIDVIN
                     GNTYEIIPQGGGDEDGYARGAWDWSMLWKRVPLTPREKRLRKTKTEPYRSPAMAGGLF
                     AIERDFFFELGLYDPGLQIWGGENFEISYKIWQCGGKLLFVPCSRVGHIYRLEGWQGN
                     PPPLYVGSSPTLKNYVRVVEVWWDEYKDYFYASRPESKALPYGDISELKKFREDHNCK
                     SFKWFMEEIAYDITAHYPLPPRNVEWGEIRGLETAYCIDSMGKTNGGFVELGPCHRMG
                     GNQLFRINEANQLMQYDQCLTKGPDGSKVMITHCNLNEFKEWQYFKNLHRFTHIASGK
                     CLDRSEVLHQVFISSCDNGKMTQKWEMNNIHSV"
     exon            179..639
                     /gene="Galnt7"
                     /inference="alignment:Splign:2.1.0"
     exon            640..806
                     /gene="Galnt7"
                     /inference="alignment:Splign:2.1.0"
     exon            807..937
                     /gene="Galnt7"
                     /inference="alignment:Splign:2.1.0"
     exon            938..1017
                     /gene="Galnt7"
                     /inference="alignment:Splign:2.1.0"
     exon            1018..1200
                     /gene="Galnt7"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1318
                     /gene="Galnt7"
                     /inference="alignment:Splign:2.1.0"
     exon            1319..1441
                     /gene="Galnt7"
                     /inference="alignment:Splign:2.1.0"
     exon            1442..1660
                     /gene="Galnt7"
                     /inference="alignment:Splign:2.1.0"
     exon            1661..1759
                     /gene="Galnt7"
                     /inference="alignment:Splign:2.1.0"
     exon            1760..1888
                     /gene="Galnt7"
                     /inference="alignment:Splign:2.1.0"
     exon            1889..2203
                     /gene="Galnt7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagcggtggc ggcggctgcg cccggctgtg tgtctctcgc cgccggagga agatgaggct
       61 gaagatcggg ttcatcttac gcagtttgct ggtggtggga agcttcctgg ggctcgtggt
      121 cctctggtct tccctgtcct cgcgacccga cgacccgagc ccactgagca ggatgaggga
      181 agacagagat gtcaataacc ccttgcctaa ccgaggaggc aatggactag ctcctgggga
      241 tgacagattc aaacctgtgg taccctggcc tcatgttgaa ggagtagaag tggacttaga
      301 gtctattaga agaaaaaaca aagccaaaaa tgaacaggag cgccatgctg gaggagattc
      361 ccagaaagac ataatgcaga gacagtacct tacctttaag ccgcagacat tcacctaccg
      421 tgatcctgtg ctacgcccag gggtccttgg gaactttgaa cccaaagaac ccgagcctca
      481 cggagtggtt ggtggccctg gagagaacgc caagcccttg gttctgggac cagaatacaa
      541 acaagcagct caagccagca tcaaggagtt tggatttaac atggcggcaa gtgacatgat
      601 ctcactggac cgcagcgtca atgacttacg ccaagaagaa tgcaagtatt ggcattatga
      661 tgaaaacctg cttacttcaa gcgtcgtcat cgtcttccat aatgaaggat ggtcaaccct
      721 catgaggacg gtccacagtg tgatcaaaag gacacccagg aagtatttag cagaaattgt
      781 gttaatcgat gacttcagca ataaagaaca cttaaaagaa aagctgaccg agtacataaa
      841 gctgtggaat ggccttgtga aggtgttccg aaatgagagg agagaaggct tgatccaggc
      901 tcggagcatc ggcgctcaga aggctaagct gggacaggtt ttgatatacc ttgatgccca
      961 ctgtgaggtg gcagttaact ggtatgcacc gctcgtagct cccatatcta aggacagaac
     1021 catttgcact gtgccgatta tagatgtcat aaacggcaac acttatgaaa ttatacccca
     1081 agggggtggt gatgaagatg ggtatgcccg aggagcatgg gattggagta tgctctggaa
     1141 acgggtgcct ctgacccctc gagagaagag actgagaaag acaaaaactg agccctatcg
     1201 gtctcccgct atggctggtg gattatttgc cattgagagg gacttcttct tcgaactggg
     1261 tctctatgat cctggtctcc agatttgggg tggtgaaaac tttgaaatct cctacaagat
     1321 ctggcagtgc ggtggcaaat tgttgtttgt gccttgttct cgtgtcgggc acatctaccg
     1381 tctagagggt tggcaaggaa atcctccacc cctttacgtt ggctcttctc cgactcttaa
     1441 gaattatgtg cgtgttgtgg aagtctggtg ggacgaatat aaagactact tctatgctag
     1501 ccgtcctgag tccaaggcgc taccttatgg ggatatctct gagctgaaga aatttcgaga
     1561 agatcacaac tgcaaaagtt tcaagtggtt tatggaggaa atcgcttacg acatcactgc
     1621 ccactaccct ttgccaccca gaaatgttga gtggggggaa atccgaggcc tcgagactgc
     1681 atactgcatt gatagcatgg gaaagacgaa cggaggcttt gtggagctag gaccctgcca
     1741 caggatgggc gggaaccagc ttttccgaat caacgaagca aatcagctca tgcagtacga
     1801 ccagtgtttg accaagggac ccgacggatc caaagtcatg attactcact gtaacctaaa
     1861 tgaatttaag gagtggcagt acttcaagaa cctgcacagg tttacgcaca tcgcctcagg
     1921 aaagtgctta gatcgctccg aggtcctcca tcaagtgttc atctccagct gtgacaacgg
     1981 taaaatgact cagaagtggg agatgaataa catccacagt gtgtgacggg aacggaagaa
     2041 gccaacagtc cacctgcgga caagtacatt tacggaggac tgaaatccgc ctgaaacctg
     2101 ctgcaaccat tattgttaat tttgtacagc tccaaacctg gggcctctct gatcagttgg
     2161 aaggggcgtt gataaactgt gatttttaca ataatattat cat
//
