LOCUS       NM_001172063            3387 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus polypeptide N-acetylgalactosaminyltransferase 6
            (Galnt6), mRNA.
ACCESSION   NM_001172063 XM_001065155 XM_002729852
VERSION     NM_001172063.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3387)
  AUTHORS   Argueso,P., Tisdale,A., Mandel,U., Letko,E., Foster,C.S. and
            Gipson,I.K.
  TITLE     The cell-layer- and cell-type-specific distribution of
            GalNAc-transferases in the ocular surface epithelia is altered
            during keratinization
  JOURNAL   Invest Ophthalmol Vis Sci 44 (1), 86-92 (2003)
   PUBMED   12506059
REFERENCE   2  (bases 1 to 3387)
  AUTHORS   Bennett,E.P., Hassan,H., Mandel,U., Hollingsworth,M.A., Akisawa,N.,
            Ikematsu,Y., Merkx,G., van Kessel,A.G., Olofsson,S. and Clausen,H.
  TITLE     Cloning and characterization of a close homologue of human
            UDP-N-acetyl-alpha-D-galactosamine:Polypeptide
            N-acetylgalactosaminyltransferase-T3, designated GalNAc-T6.
            Evidence for genetic but not functional redundancy
  JOURNAL   J Biol Chem 274 (36), 25362-25370 (1999)
   PUBMED   10464263
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On or before Dec 29, 2011 this sequence version replaced
            XM_001065155.1, XM_002729852.1, NM_001172063.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.1388427.1,
                                           SRR22582419.2174014.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676787, SAMN16676808
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-491               JAXUCZ010000007.1  133693794-133694284 c
            492-664             JAXUCZ010000007.1  133691967-133692139 c
            665-814             JAXUCZ010000007.1  133680433-133680582 c
            815-1049            JAXUCZ010000007.1  133679046-133679280 c
            1050-1167           JAXUCZ010000007.1  133675143-133675260 c
            1168-1368           JAXUCZ010000007.1  133673768-133673968 c
            1369-1500           JAXUCZ010000007.1  133673197-133673328 c
            1501-1602           JAXUCZ010000007.1  133672746-133672847 c
            1603-1755           JAXUCZ010000007.1  133671190-133671342 c
            1756-1962           JAXUCZ010000007.1  133670037-133670243 c
            1963-3387           JAXUCZ010000007.1  133668612-133670036 c
FEATURES             Location/Qualifiers
     source          1..3387
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q36"
     gene            1..3387
                     /gene="Galnt6"
                     /note="polypeptide N-acetylgalactosaminyltransferase 6"
                     /db_xref="GeneID:100361647"
                     /db_xref="RGD:2319726"
     CDS             1..1869
                     /gene="Galnt6"
                     /EC_number="2.4.1.41"
                     /note="UDP-N-acetyl-alpha-D-galactosamine:polypeptide
                     N-acetylgalactosaminyltransferase 6 (GalNAc-T6)"
                     /codon_start=1
                     /product="polypeptide N-acetylgalactosaminyltransferase 6"
                     /protein_id="NP_001165534.1"
                     /db_xref="GeneID:100361647"
                     /db_xref="RGD:2319726"
                     /translation="MRFFRRRHMPLRLAMLGSVFMLFLFIQQKDVSSREQAMEKPWLK
                     SLAGQKDHVLDLMLGAVNNIRDVMPKLQIRAPEPQQNPVSTNHSCLPGFYTPAELRPF
                     WERPPQDPNSPGADGKAFQKKEWTLLETQEKDEGYKKHCFNAFASDRISLQRSLGPDT
                     RPPECVDQKFRRCPPLPTTSVVIVFHNEAWSTLLRTVYSVLHTSPAILLKEIILVDDA
                     STDEHLKEKLERYVQQLQIVRVVRQQERKGLITARLLGASVAQAEVLTFLDAHCECFH
                     GWLEPLLARIAEDKTAVVSPDIVTIDLNTFQFSKPMRRGKAHSRGNFDWSLTFGWEML
                     PEHEKQRRKDETYPIKSPTFAGGLFSISKAYFEHIGTYDNQMEIWGGENVEMSFRVWQ
                     CGGQLEIIPCSVVGHVFRTKSPHTFPKGTSVIARNQVRLAEVWMDDYKKIFYRRNLQA
                     AKMAKENNFGDVSERLRLREQLHCHNFSWYLHNVYPEMFVPDLNPTFSGAIKNLGTSQ
                     CLDVGENNRGGKPLIMYVCHNLGGNQYFEYTSQRDLRHNIGKQLCLHASGSTLGLRNC
                     QFIGKNSEVPKDEEWELTQDQLIRNLGSGTCLTSKDKKPAMAPCNPSDPYQLWLFV"
     exon            1..491
                     /gene="Galnt6"
                     /inference="alignment:Splign:2.1.0"
     exon            492..664
                     /gene="Galnt6"
                     /inference="alignment:Splign:2.1.0"
     exon            665..814
                     /gene="Galnt6"
                     /inference="alignment:Splign:2.1.0"
     exon            815..1049
                     /gene="Galnt6"
                     /inference="alignment:Splign:2.1.0"
     exon            1050..1167
                     /gene="Galnt6"
                     /inference="alignment:Splign:2.1.0"
     exon            1168..1368
                     /gene="Galnt6"
                     /inference="alignment:Splign:2.1.0"
     exon            1369..1500
                     /gene="Galnt6"
                     /inference="alignment:Splign:2.1.0"
     exon            1501..1602
                     /gene="Galnt6"
                     /inference="alignment:Splign:2.1.0"
     exon            1603..1755
                     /gene="Galnt6"
                     /inference="alignment:Splign:2.1.0"
     exon            1756..3387
                     /gene="Galnt6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaggttct ttcgaaggcg ccacatgccc ctgcgcctag ccatgctggg cagcgtcttc
       61 atgctcttcc tcttcatcca gcagaaggat gtaagcagcc gggagcaggc catggagaaa
      121 ccgtggctga agtccctggc gggacagaag gaccacgtcc tggacctcat gcttggtgct
      181 gtgaacaaca ttagggacgt catgcccaag ctgcagatca gggctccgga accccaacag
      241 aatccagtct ccacaaacca ctcctgcctt ccggggttct atacccccgc tgagctgaga
      301 cccttctggg aacgaccacc tcaggatccc aacagccctg gggcagatgg aaaagcattt
      361 cagaagaaag aatggaccct tctagagact caggaaaagg atgaaggcta taagaaacac
      421 tgctttaatg cctttgccag tgaccgcatc tccttgcaga ggtccctggg gccagacacg
      481 cggcctcctg agtgtgttga ccagaagttc cggcgctgcc cgccactgcc caccaccagt
      541 gtggtcattg tattccacaa cgaagcctgg tccactctgc tgcgcacagt atacagcgtc
      601 ctgcacacca gccctgccat cttgctgaag gaaatcatcc tagtggatga tgccagcaca
      661 gacgagcacc tgaaggagaa gctggaacgg tacgttcaac agctgcagat cgtgcgcgtg
      721 gttcgacagc aggagcggaa ggggctcatc acggcccggc tgctgggggc cagtgtggcg
      781 caggctgagg tgcttacgtt cctggacgcg cactgtgagt gtttccacgg ctggctggag
      841 cccctcctgg ctcgaatcgc tgaagacaag acagcggtgg tgagcccaga catcgtcacc
      901 attgacctta acaccttcca gttctccaaa cccatgcgga gaggcaaagc ccacagccgg
      961 ggcaacttcg actggagcct gacctttggc tgggagatgc tccctgaaca cgagaagcag
     1021 agacgcaagg atgagaccta ccccatcaag tccccaacgt ttgctggcgg cctcttctcc
     1081 atctccaagg cctactttga gcacatcggt acctatgata accagatgga gatctgggga
     1141 ggggagaatg tggaaatgtc cttccgggtg tggcagtgcg ggggccagct ggagatcatc
     1201 ccctgctctg tggttggcca cgtgttccgc accaagagtc cccacacctt ccccaaggga
     1261 accagcgtta ttgcacgcaa tcaggtgcgc ctggctgagg tctggatgga cgactacaag
     1321 aagattttct acaggagaaa tttacaagca gcaaagatgg ccaaggagaa caactttggt
     1381 gacgtttcgg agagactgcg actgagggaa cagctacact gtcacaactt ttcctggtac
     1441 ctgcacaatg tctacccaga gatgtttgtc cccgacctga accccacctt ctctggagct
     1501 atcaagaatc tcggcaccag tcagtgtttg gatgtgggtg agaacaaccg tggaggaaag
     1561 cctctcatca tgtacgtgtg ccacaacctc ggcggcaatc agtactttga gtacacctcc
     1621 cagagggacc tccgccacaa cattgggaag cagctgtgtc tacatgccag tgggagcacg
     1681 ctgggcctta ggaactgtca gttcattggc aaaaatagcg aagtgcccaa ggacgaggaa
     1741 tgggaactga cccaggatca actcatcaga aacttaggat ccggtacctg cctgacatcc
     1801 aaggacaaaa agccagctat ggccccctgc aatcccagtg acccctacca gctctggctg
     1861 tttgtctagg cccggggtca tccccagtac aggcccagca agctccccca agcagtggag
     1921 tcaccaggca tctgggagtc ctctccccca gatcctctgg aggcccgaga gttggattct
     1981 taagcctggg ggccaccaag gcaggacctt cttgcaacaa caccggttcc attttcttcc
     2041 ctccatgcca gtggagagac caagaggtta cttgctactt ggcccaaagc tttcttgatc
     2101 ttctagagac aggagcctcc aaagcagcct ggaagtgtgc cctgcagaag gactggaggt
     2161 gcagagaccc tctcttgtca acagaccctg gcagcagacc gtcttgatgt acagagtgcc
     2221 ttcctcccat gtcatctgca tagttacctg tggaggagac aggaaggagc cctccattga
     2281 gaaggttgag acctagctgg agtatagttc agggaaaggc cccgggtttg accccttagc
     2341 accacgaaaa cagaagaggc caggagagga aggaaggcag agggcggctg agggaaggca
     2401 gagggctttt ctgcaattac acagaaattg gtaggtggct caagctgggc ctgaatcccc
     2461 atctttgggg ctgtaccagg gcctccttcc agcacgcaag aacactagac catgagctgc
     2521 cagccgtgcc atttcttgac ccctcactga ctgaccattc tggccggctg tcctccagaa
     2581 agccaggtag caagataggg gagcgcactg agaatcccgg actgttgggg tggaaagaag
     2641 ttcatgggct cagacagaca gctggtgagt ctcaagctaa gaccaaggcc cttttgttct
     2701 gtgtacaagg cgagtaaaca acaaagcagg atctaggcat gaaggcacac gcttttagtc
     2761 tcggcactcg gagactaaag cagcaaagtc tttagtccag cgtgggcttc aggaatagac
     2821 agtctgtcaa aagcaataaa agacataacg tggagagcat gaagggtgct accttgcagc
     2881 ccctgaacta aaatagcccc cctgtgttac atctattcct cagcagaaac tagataggtg
     2941 tgttgtccaa ggtcacctgg taaggtgttt ggcagctcca agctcagacc caagataagg
     3001 ctaatcggag tccttagcaa gtctgagggg tcagggacag tgtgcaaatg cctggagggc
     3061 tcatcccatc tgctcacctg agtgccctac atggagccga cccgaagatg ccaacctttc
     3121 tacaatcaac ttggaccccc acggttgccg tgcctggaag aaaatagaaa cgtccaggaa
     3181 ggctttgggg gacttcagca tgggaccatg gctgcctcct gctcggtgca agggcacatg
     3241 gcaggaagcc tccctcgtcc cctgggagac aatcgggtag cccagccaaa gggaaagagt
     3301 ctgaccaagc tatgatccat ggtgggaagg gggaagagag gctgattggg aacctggtgg
     3361 aaataaaggt tttgtggtat tggtaaa
//
