LOCUS       NM_031796               3512 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus polypeptide N-acetylgalactosaminyltransferase 5
            (Galnt5), mRNA.
ACCESSION   NM_031796
VERSION     NM_031796.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3512)
  AUTHORS   Simmons,A.D., Musy,M.M., Lopes,C.S., Hwang,L.Y., Yang,Y.P. and
            Lovett,M.
  TITLE     A direct interaction between EXT proteins and glycosyltransferases
            is defective in hereditary multiple exostoses
  JOURNAL   Hum Mol Genet 8 (12), 2155-2164 (1999)
   PUBMED   10545594
REFERENCE   2  (bases 1 to 3512)
  AUTHORS   Ten Hagen,K.G., Hagen,F.K., Balys,M.M., Beres,T.M., Van
            Wuyckhuyse,B. and Tabak,L.A.
  TITLE     Cloning and expression of a novel, tissue specifically expressed
            member of the UDP-GalNAc:polypeptide
            N-acetylgalactosaminyltransferase family
  JOURNAL   J Biol Chem 273 (42), 27749-27754 (1998)
   PUBMED   9765313
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF049344.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF049344.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760384, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3512
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q21"
     gene            1..3512
                     /gene="Galnt5"
                     /note="polypeptide N-acetylgalactosaminyltransferase 5"
                     /db_xref="GeneID:83627"
                     /db_xref="RGD:620361"
     exon            1..1536
                     /gene="Galnt5"
                     /inference="alignment:Splign:2.1.0"
     CDS             113..2905
                     /gene="Galnt5"
                     /EC_number="2.4.1.41"
                     /note="galNAc-T5; pp-GaNTase 5; polypeptide GalNAc
                     transferase 5; protein-UDP acetylgalactosaminyltransferase
                     5; UDP-GalNAc:polypeptide
                     N-acetylgalactosaminyltransferase 5;
                     UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase
                     T5; UDP-N-acetyl-alpha-D-galactosamine:polypeptide
                     N-acetylgalactosaminyltransferase 5 (GalNAc-T5)"
                     /codon_start=1
                     /product="polypeptide N-acetylgalactosaminyltransferase 5"
                     /protein_id="NP_113984.1"
                     /db_xref="GeneID:83627"
                     /db_xref="RGD:620361"
                     /translation="MNKIRKFFRGSGRVLAFIFVASVIWLLFDMAALRLSFSEINTGI
                     LKEDIMRREQTGFRVEADQMTILSPSSRGMRPPRNGAGGKESFRKAENRVLKVEENVD
                     QVQRKGKMQFLLGRGKAVSLWHRTHVQTLPVTLPMQKTQGRDSKPEVSSLHMMSKQTT
                     VLGSEKDSFTVSRGVPLNKTAEHTETLDKKQEAPENYNLSSDTSKQASQRALNVTISV
                     RTDRSKQQSQTVTKSSIQFASLPILKPEEVTVTKKTEAQGKDLKYEAHKARPLLKFTA
                     DVGHLKKQSTNETGLGVLPEADGAKVAPGKKLNFSESQIVIITKEEGQKTDTKEVPNS
                     KIQTVFPKLLGESQGKHIPRSQSQTLSSPLAPKRAVSQSKPTLAEELHTARSNLTAKA
                     TTVGHQQSHANISENPGKHHVLRIDVTLSPRDLNAPGQFGRPVVVPPGKKKEAEQRWK
                     EGNFNVYLSDLIPVDRAIEDTRPAGCAEQLVHNDLPTTSIIMCFVDEVWSALLRSVHS
                     VLNRSPPHLIKEILLVDDFSTKDYLKANLDKYMSQFPKVRILRLKERHGLIRARLAGA
                     QNATGDVLTFLDSHVECNVGWLEPLLERVYLNRKKVACPVIEVINDKDMSYMTVDNFQ
                     RGVFTWPMNFGWRTIPPDVIAKNGIKETDIIRCPVMAGGLFSIDKSYFYELGTYDPGL
                     DVWGGENMELSFKVWMCGGEIEIIPCSRVGHIFRNDNPYSFPKDRMKTVERNLVRVAE
                     VWLDEYKELFYGHGDHLIDQGLDVGNLTQQRELRKKLKCQSFKWYLDNVFPDLKAPVV
                     RASGVFINLALGKCVSIKNITVVLEDCDGSSELQQFNYTWVRLIKHGEWCVAPIPDKG
                     SLTLYPCDNRNNRLKWLHRSASAFHPELVDHIVFESYQQLLCMEGNFSQKTLKLAACN
                     PTEPQQKWKFEKYYDV"
     exon            1537..1703
                     /gene="Galnt5"
                     /inference="alignment:Splign:2.1.0"
     exon            1704..1823
                     /gene="Galnt5"
                     /inference="alignment:Splign:2.1.0"
     exon            1824..1959
                     /gene="Galnt5"
                     /inference="alignment:Splign:2.1.0"
     exon            1960..2079
                     /gene="Galnt5"
                     /inference="alignment:Splign:2.1.0"
     exon            2080..2197
                     /gene="Galnt5"
                     /inference="alignment:Splign:2.1.0"
     exon            2198..2521
                     /gene="Galnt5"
                     /inference="alignment:Splign:2.1.0"
     exon            2522..2602
                     /gene="Galnt5"
                     /inference="alignment:Splign:2.1.0"
     exon            2603..2764
                     /gene="Galnt5"
                     /inference="alignment:Splign:2.1.0"
     exon            2765..3512
                     /gene="Galnt5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagagagggg ccttgctcct gctgctgcta ctgctgctgt tactgttgct acctcaactc
       61 tctctccact ccaggtaagc agagggcaag ctgcaaggca agcctttgta cgatgaacaa
      121 gatccgaaag tttttccgag gaagtgggcg agtcttggca tttatatttg tagcttctgt
      181 catctggctg ctctttgata tggcagctct ccgcctctca ttcagtgaga tcaacacagg
      241 gatactcaaa gaagatatca tgaggaggga acagacagga ttcagagttg aggcagacca
      301 aatgacgatc ctttccccca gcagcagagg gatgaggccg ccccggaatg gagcgggagg
      361 caaggagagc tttagaaagg ctgagaaccg tgtactcaag gttgaggaga atgtggacca
      421 agtccagagg aaagggaaaa tgcagttcct cctgggaagg gggaaggctg tgtctttgtg
      481 gcatcgtaca catgtgcaaa ccctcccagt gacactcccc atgcagaaga cccaggggag
      541 agacagcaag cctgaagtct cctccttgca catgatgtcc aagcagacaa cagtgttagg
      601 gtctgagaag gactctttca cagtgtcaag aggagttcca ttgaacaaaa cagcagaaca
      661 tacagaaacc ttagataaaa aacaagaggc cccagagaat tataatctca gcagtgatac
      721 atcaaagcaa gcctcccaaa gggccctgaa tgtgaccatc agtgtcagga ctgacagatc
      781 aaagcagcaa tcacagacag taacaaaatc aagcatacaa tttgccagcc taccaatcct
      841 gaaacctgag gaagtcacgg tcacaaagaa aactgaggct cagggcaaag acctaaaata
      901 tgaagcccat aaagcgcgcc ctcttcttaa gttcactgct gatgtgggtc atttaaagaa
      961 acaatctaca aatgagacag gattgggagt attgccagaa gccgatgggg ccaaagtggc
     1021 gccagggaag aaactaaatt tctctgaaag tcagattgtg attataacta aagaggaagg
     1081 ccagaagaca gacaccaaag aggtacctaa ttctaaaatc caaactgtct tccctaaatt
     1141 actgggtgaa agccaaggaa aacatatccc caggagtcag agccagacct tgtcctctcc
     1201 attagctcca aagagagctg tgtctcagtc caagcccacc ttagctgagg aactccatac
     1261 agcaagaagc aacttgactg ccaaggccac aactgtagga caccagcaaa gccatgcaaa
     1321 tatctctgaa aaccctggaa agcatcacgt gctcagaatc gatgtgaccc tctctccaag
     1381 agatctcaat gctccaggtc agttcgggcg ccctgtcgtg gttccccctg gaaagaagaa
     1441 ggaggctgaa cagagatgga aagaaggaaa cttcaatgtc taccttagcg atttgattcc
     1501 agtggacaga gccattgaag acacaaggcc tgctgggtgt gcagagcaac tagttcacaa
     1561 cgacctccca accaccagca tcatcatgtg cttcgtggat gaggtgtggt ctgctctcct
     1621 gaggtctgtg cacagtgtcc tcaaccgctc ccctccacac ctcatcaagg agattctgct
     1681 ggtggatgat ttcagcacca aagactacct gaaagctaat ttggataaat acatgtctca
     1741 gtttccaaaa gttcggattc ttcgcctcaa ggagagacat ggcttgatca gagcaaggct
     1801 ggctggggcg cagaatgcaa caggtgatgt gctgacattc ctagactccc atgtggaatg
     1861 taatgtgggc tggctggaac cccttctgga gagagtttat ttaaatagaa agaaagtagc
     1921 ctgtccagta attgaagtca tcaatgacaa ggacatgagt tacatgacag tggacaactt
     1981 ccaaagaggt gtcttcacct ggcccatgaa ctttggctgg agaacaatcc ctccagatgt
     2041 tattgcaaaa aatggaatta aagaaacaga tataataagg tgcccagtca tggcaggtgg
     2101 attattttcc attgacaaaa gttactttta tgaacttgga acttatgacc ctggtcttga
     2161 tgtttggggt ggagaaaata tggagctatc attcaaggtc tggatgtgtg gtggtgaaat
     2221 cgagatcatt ccctgttcca gagtgggcca catattcaga aatgacaatc cctactcctt
     2281 ccccaaggac cgcatgaaga cggtggaacg gaatctggtg cgggttgctg aggtctggct
     2341 cgatgagtac aaggaactct tctatggcca cggggatcac ctcatagacc aagggctgga
     2401 tgtgggcaac ctcacccagc aaagggagtt gcgaaagaag ctgaagtgcc aaagtttcaa
     2461 gtggtacttg gacaatgtct ttcccgactt gaaggcgcct gttgtaagag ctagtggtgt
     2521 gtttattaat ctggccttgg gcaagtgtgt ttccatcaaa aatatcacag ttgtcctgga
     2581 ggactgcgat gggagcagtg agcttcaaca atttaattat acctgggtaa gacttattaa
     2641 gcatggagag tggtgtgtgg cgcccatccc tgataaagga tccctgacgc tgtacccgtg
     2701 tgacaacaga aacaacaggc ttaaatggct gcacagatca gcatctgcct ttcatccaga
     2761 actggtggac cacattgttt ttgaaagcta tcagcagtta ttatgtatgg aagggaattt
     2821 ctctcagaag accctgaaac tggctgcttg taacccgacg gaaccacaac aaaagtggaa
     2881 atttgaaaaa tactacgatg tctaatgaga aatactttat ctagttaaac cactagattc
     2941 tgtgaaaata acacaaaaac ttggtgactg tatttctctc catagtagtt taaattccat
     3001 tttaatagca tttgaatgga aggcttttga aaatgactac atttgaatca tcaaacaata
     3061 actcagggaa agaagttgcc attgggctgc tgttcttcag ctctgggtgg cctttggaag
     3121 tgtcttgtgt cccaccctgc attggggtgc atactgcaag tcttccttcc ggactctcac
     3181 aggtaaccag aattggaaac aaagaatgat gtcatgcccg tgactgctgt catggcccat
     3241 gaatggcgct aaacccaacc acattctgat ttcaccaaat tcatctgcat ggattcccac
     3301 acctggaaga catagctagc tgcacagaga caccaccttg ttgaaagagc tccatgttta
     3361 cctggcagtg tagagcagtc tgctcaggtc tccatgactc ctcctttttt ttccatgacc
     3421 cctcctaata gggggtcttg atctgaatgt tttcttaatt tgaagctatt ggggggggat
     3481 ttaatcaaaa aggaagaagc cttaatgtac tt
//
