LOCUS       NM_001079884            2546 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus polypeptide N-acetylgalactosaminyltransferase 18
            (Galnt18), mRNA.
ACCESSION   NM_001079884 XM_001074085 XM_215017
VERSION     NM_001079884.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2546)
  AUTHORS   Raman J, Guan Y, Perrine CL, Gerken TA and Tabak LA.
  TITLE     UDP-N-acetyl-alpha-D-galactosamine:polypeptide
            N-acetylgalactosaminyltransferases: completion of the family tree
  JOURNAL   Glycobiology 22 (6), 768-777 (2012)
   PUBMED   22186971
  REMARK    Erratum:[Glycobiology. 2015 Apr;25(4):465. PMID: 25715345]
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC128745.1.
            
            On or before Jan 5, 2007 this sequence version replaced
            XM_215017.4, XM_001074085.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC128745.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5756307,
                                           SAMEA5760383 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2546
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q33"
     gene            1..2546
                     /gene="Galnt18"
                     /gene_synonym="Galntl4; RGD1309623"
                     /note="polypeptide N-acetylgalactosaminyltransferase 18"
                     /db_xref="GeneID:293181"
                     /db_xref="RGD:1309623"
     exon            1..645
                     /gene="Galnt18"
                     /gene_synonym="Galntl4; RGD1309623"
                     /inference="alignment:Splign:2.1.0"
     CDS             411..2234
                     /gene="Galnt18"
                     /gene_synonym="Galntl4; RGD1309623"
                     /EC_number="2.4.1.41"
                     /note="polypeptide N-acetylgalactosaminyltransferase-like
                     4; putative polypeptide
                     N-acetylgalactosaminyltransferase-like protein 4;
                     UDP-N-acetyl-alpha-D-galactosamine:polypeptide
                     N-acetylgalactosaminyltransferase 18;
                     UDP-N-acetyl-alpha-D-galactosamine:polypeptide
                     N-acetylgalactosaminyltransferase-like 4"
                     /codon_start=1
                     /product="polypeptide N-acetylgalactosaminyltransferase
                     18"
                     /protein_id="NP_001073353.1"
                     /db_xref="GeneID:293181"
                     /db_xref="RGD:1309623"
                     /translation="MVCTRKTKTLVSTCVILSGMTNIICLLYVGWVTNYIASVYVRGQ
                     EPAPDKKLEEDKGDTLKIIERLDHLENVIKQHIQEAPAKPEEAEAEPFTDSSLFAHWG
                     QELSPEGRRVALKQFQYYGYNAYLSDRLPLDRPLPDLRPSGCRNLSFPDSLPEVSIVF
                     IFVNEALSVLLRSIHSAMERTPSHLLKEIILVDDNSSNEELKEKLTEYVDKVNGQKPG
                     FIKVVRHSKQEGLIRSRVSGWRAATAPVVALFDAHVEFNVGWAEPVLTRIKENRKRII
                     SPSFDNIKYDNFEIEEYPLAAQGFDWELWCRYLNPPKAWWKLENSTAPIRSPALIGCF
                     IVDRQYFEEIGLLDEGMEVYGGENVELGIRVWQCGGSVEVLPCSRIAHIERAHKPYTE
                     DLTAHVRRNALRVAEVWMDEFKSHVYMAWNIPQEDSGIDIGDITARKALRKQLQCKTF
                     RWYLVSVYPEMRMYSDIIAYGVLQNSLKTDLCFDQGPDTENVPIVYICHGMTPQNVYY
                     TSSQQIHVGVLSPTIDDDDNRCLVDVNSRPRLIECSYAKAKRMKLHWQFSQGGSIQNR
                     KSKRCLELQENSDMEFGFQLVLQKCSGQHWTITNVLRSLVS"
     exon            646..838
                     /gene="Galnt18"
                     /gene_synonym="Galntl4; RGD1309623"
                     /inference="alignment:Splign:2.1.0"
     exon            839..1005
                     /gene="Galnt18"
                     /gene_synonym="Galntl4; RGD1309623"
                     /inference="alignment:Splign:2.1.0"
     exon            1006..1189
                     /gene="Galnt18"
                     /gene_synonym="Galntl4; RGD1309623"
                     /inference="alignment:Splign:2.1.0"
     exon            1190..1387
                     /gene="Galnt18"
                     /gene_synonym="Galntl4; RGD1309623"
                     /inference="alignment:Splign:2.1.0"
     exon            1388..1502
                     /gene="Galnt18"
                     /gene_synonym="Galntl4; RGD1309623"
                     /inference="alignment:Splign:2.1.0"
     exon            1503..1688
                     /gene="Galnt18"
                     /gene_synonym="Galntl4; RGD1309623"
                     /inference="alignment:Splign:2.1.0"
     exon            1689..1826
                     /gene="Galnt18"
                     /gene_synonym="Galntl4; RGD1309623"
                     /inference="alignment:Splign:2.1.0"
     exon            1827..1922
                     /gene="Galnt18"
                     /gene_synonym="Galntl4; RGD1309623"
                     /inference="alignment:Splign:2.1.0"
     exon            1923..2087
                     /gene="Galnt18"
                     /gene_synonym="Galntl4; RGD1309623"
                     /inference="alignment:Splign:2.1.0"
     exon            2088..2515
                     /gene="Galnt18"
                     /gene_synonym="Galntl4; RGD1309623"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagcgtggg ctggtggcat ctcctaggca gtcctggaga tgggaagcag cgcggcccgg
       61 ccctggcagt gacaaagttt cccagccctg caggtctcgt cacgccactg cgggccaccc
      121 gtgactgcct agggaaaggc tccgggattt tgaatttggg ggaaaaaacc ccaaacaaaa
      181 aaccaaaccc accccgtttc ctttgtggag ctctttttca gggtggccag cggcgggagc
      241 tgcaaacttg agcgccgcgg ctcacaccgc caggggaccc gcctttggag agacttaggt
      301 gctggcgcac ccagaggccc cagacgtgcc aaggggttta agcgcggggg agttaggggt
      361 gcacagcgag gaggggcccc gggagctcta tatggaggag ggaccccaga atggtgtgta
      421 ccaggaagac caaaactttg gtgtccactt gcgtgatcct gagcggcatg accaacatca
      481 tatgcctgct gtacgtgggc tgggtcacca actacattgc cagcgtgtat gtgcgggggc
      541 aggagccagc gcccgacaag aaactggagg aagataaagg ggacaccctg aaaattatcg
      601 agcggctgga ccacttggag aatgtcatca aacagcatat ccaagaggct cctgccaagc
      661 ctgaggaggc agaggctgag cccttcacgg actcctccct gtttgcacac tggggtcagg
      721 agctcagccc cgaaggccgg cgtgtggccc tgaagcagtt ccagtactat ggctacaacg
      781 cctacctcag tgaccggcta cccctcgacc ggcccctgcc agacctcaga cccagtgggt
      841 gccgcaacct ctcattccct gacagcctcc cagaggtgag catcgtgttc atcttcgtca
      901 atgaggcact gtctgtgctg ctgcgttcta tccactcagc catggagcgc acaccatcac
      961 acctgctcaa ggagatcatc ctggtggacg acaacagcag caacgaggag ctcaaagaaa
     1021 agctgactga atatgtggac aaagtgaacg ggcagaaacc aggcttcatc aaagttgtgc
     1081 ggcacagcaa gcaggaaggc ctcatccgct ccagggtcag cggctggagg gcagccacag
     1141 cccctgtggt ggcactgttc gatgcccatg tggagttcaa tgtgggctgg gcggaaccag
     1201 tcctcacccg aatcaaggaa aaccggaaac ggatcatctc accatctttt gataacatca
     1261 aatatgacaa ctttgagata gaagaatacc cactggctgc ccaaggcttc gactgggagc
     1321 tgtggtgccg ctacctgaac ccacccaagg cctggtggaa gctggagaac tccacagccc
     1381 caatcaggag ccccgccctc attggctgtt tcattgtgga ccggcagtac ttcgaggaga
     1441 ttggcctgtt ggacgaaggc atggaggtct atggagggga gaatgtggag cttgggatca
     1501 gggtatggca gtgtggcggg agtgtggagg tcctgccctg ctctcggatt gcccacatcg
     1561 agcgagccca caagccctac acagaggacc tcactgccca cgtgcggaga aatgccctca
     1621 gggtagctga agtctggatg gatgaattca aaagtcatgt ctacatggca tggaacatac
     1681 cacaagagga ctcagggatt gacattgggg acatcacagc acggaaggct ctgaggaagc
     1741 agctgcagtg taagactttc aggtggtacc tggtcagtgt gtacccagag atgaggatgt
     1801 actctgacat catcgcctat ggagtgctgc agaattccct gaagactgat ttgtgttttg
     1861 atcagggccc agatacagag aacgtcccca tcgtgtacat atgccatggg atgactcccc
     1921 agaatgtgta ctacacgagc agccagcaga tccacgtggg tgtcctgagt cccactattg
     1981 atgacgatga caaccggtgt ctggtggacg tcaacagccg gccacgactc atcgagtgca
     2041 gctacgccaa ggccaagagg atgaagctgc actggcagtt ctcccaggga ggctccatcc
     2101 agaaccgcaa gtccaagcgc tgcctggagc tgcaagaaaa cagcgacatg gagtttggtt
     2161 tccagctggt gctgcagaag tgctcgggac aacactggac tatcaccaat gtcctgagga
     2221 gcctggtgtc ctgacccttc acagacacca ccagccactg ctttgctact gtgtagcatc
     2281 agctgcaatt gctgcctgct gtcacgtggg gctgccagga gtctgagagg gggagccaag
     2341 tgggtggcct cccccacaaa agagcttttt atttcctatt cgattttcat ggagtttata
     2401 gagagatgca gagaggtggg tgagggtaca atatcctgaa ctattttaca attgtaaata
     2461 ggggacaaat ggaaaatatt tataactggc aataaaatat tattgattaa gaaaaaaaaa
     2521 aaaaaaaaaa aaaaaaaaaa aaaaaa
//
