LOCUS       NM_001025112            4709 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus polypeptide N-acetylgalactosaminyltransferase 17
            (Galnt17), mRNA.
ACCESSION   NM_001025112 XM_222113
VERSION     NM_001025112.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4709)
  AUTHORS   Nakamura,N., Toba,S., Hirai,M., Morishita,S., Mikami,T.,
            Konishi,M., Itoh,N. and Kurosaka,A.
  TITLE     Cloning and expression of a brain-specific putative UDP-GalNAc:
            polypeptide N-acetylgalactosaminyltransferase gene
  JOURNAL   Biol Pharm Bull 28 (3), 429-433 (2005)
   PUBMED   15744064
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Oct 27, 2022 this sequence version replaced NM_001025112.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB040671.1, SRR26643299.50174.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-876               JAXUCZ010000012.1  30959460-30960335
            877-1060            JAXUCZ010000012.1  31131929-31132112
            1061-1227           JAXUCZ010000012.1  31173701-31173867
            1228-1402           JAXUCZ010000012.1  31209333-31209507
            1403-1600           JAXUCZ010000012.1  31213701-31213898
            1601-1718           JAXUCZ010000012.1  31325328-31325445
            1719-1904           JAXUCZ010000012.1  31383500-31383685
            1905-2042           JAXUCZ010000012.1  31390025-31390162
            2043-2138           JAXUCZ010000012.1  31395421-31395516
            2139-2306           JAXUCZ010000012.1  31414375-31414542
            2307-4709           JAXUCZ010000012.1  31415716-31418118
FEATURES             Location/Qualifiers
     source          1..4709
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q12"
     gene            1..4709
                     /gene="Galnt17"
                     /gene_synonym="Wbscr17"
                     /note="polypeptide N-acetylgalactosaminyltransferase 17"
                     /db_xref="GeneID:288611"
                     /db_xref="RGD:1563452"
     exon            1..876
                     /gene="Galnt17"
                     /gene_synonym="Wbscr17"
                     /inference="alignment:Splign:2.1.0"
     CDS             639..2435
                     /gene="Galnt17"
                     /gene_synonym="Wbscr17"
                     /EC_number="2.4.1.41"
                     /note="pt-GalNAc-T; Williams-Beuren syndrome chromosome
                     region 17 homolog; putative polypeptide
                     N-acetylgalactosaminyltransferase-like protein 3"
                     /codon_start=1
                     /product="polypeptide N-acetylgalactosaminyltransferase 17
                     precursor"
                     /protein_id="NP_001020283.1"
                     /db_xref="GeneID:288611"
                     /db_xref="RGD:1563452"
                     /translation="MASLRRVKVLLVLNLIAVAGFVIFLAKCRPIAVRSGDAFHEIRP
                     RAEVANLSAHSASPIQDAVLKRLSLLEDIVYRQLNGLSKSLGLIEGYGGRGKGGLPAT
                     LSPSEEEKAKGPHEKYGYNSYLSEKISLDRSIPDYRPTKCKELKYSKELPQISIIFIF
                     VNEALSVILRSVHSAVNHTPTHLLKEIILVDDNSDEEELKAPLEEYVHKRYPGLVKVV
                     RNQKREGLIRARIEGWKVATGQVTGFFDAHVEFTAGWAEPVLSRIQENRKRVILPSID
                     NIKQDNFEVQRYENSAHGYSWELWCMYISPPKDWWDAGDPSLPIRTPAMIGCSFVVNR
                     KFFGEIGLLDPGMDVYGGENIELGIKVWLCGGSMEVLPCSRVAHIERKKKPYNSNIGF
                     YTKRNALRVAEVWMDDYKSHVYIAWNLPLENPGIDIGDVSERKALRKSLKCKNFQWYL
                     DHVYPEMRRYNNTIAYGELRNNKAKDVCLDQGPLENHTAILYPCHGWGPQLARYTKEG
                     FLHLGALGTTTLLPDTRCLVDNSKSRLPQLLDCDKVKSSLYKRWNFIQNGAIMNKGTG
                     RCLEVENRGLAGIDLILRSCTGQRWTIKNPIK"
     exon            877..1060
                     /gene="Galnt17"
                     /gene_synonym="Wbscr17"
                     /inference="alignment:Splign:2.1.0"
     exon            1061..1227
                     /gene="Galnt17"
                     /gene_synonym="Wbscr17"
                     /inference="alignment:Splign:2.1.0"
     exon            1228..1402
                     /gene="Galnt17"
                     /gene_synonym="Wbscr17"
                     /inference="alignment:Splign:2.1.0"
     exon            1403..1600
                     /gene="Galnt17"
                     /gene_synonym="Wbscr17"
                     /inference="alignment:Splign:2.1.0"
     exon            1601..1718
                     /gene="Galnt17"
                     /gene_synonym="Wbscr17"
                     /inference="alignment:Splign:2.1.0"
     exon            1719..1904
                     /gene="Galnt17"
                     /gene_synonym="Wbscr17"
                     /inference="alignment:Splign:2.1.0"
     exon            1905..2042
                     /gene="Galnt17"
                     /gene_synonym="Wbscr17"
                     /inference="alignment:Splign:2.1.0"
     exon            2043..2138
                     /gene="Galnt17"
                     /gene_synonym="Wbscr17"
                     /inference="alignment:Splign:2.1.0"
     exon            2139..2306
                     /gene="Galnt17"
                     /gene_synonym="Wbscr17"
                     /inference="alignment:Splign:2.1.0"
     exon            2307..4709
                     /gene="Galnt17"
                     /gene_synonym="Wbscr17"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agatttgagc gtgactgcgg atcctggagg atgcaggcac cgggcgcggg gttttcctcc
       61 tcccggagtg atggagagag ccggtgagct gaacaaagac acccgccctg aggagcgggt
      121 cctttgctga agaacgctat tttcgccccg cgacggccgc gcaactcctg gagtggcgcg
      181 ctcttccgcc ggcgggcgca aagcaggagc cgggcacctg cgcgccactc ccgccacatc
      241 tcgggggcac cggattgttc ccgaaggtct acgtctccgg aggaggtcca aaggcaacct
      301 gtttgctgtt gaacagtgag agaccccggg acctttatcg tttgctgtct cgtagaaggg
      361 actgcgtgct gtggacggag caggcatttc agcgacactt ttgtaagcca gggtcttcga
      421 tgtgagtgac cacgcttggt ccccaacagc cgcatcctcc cagtggtctc tgtctgctga
      481 gtatctgtgg ccagaagcag ctgggacccc cagtcctttg ctccatcctc tggccattgt
      541 cccgtgtgtg gggtcggcgc cgtctcaggc tgccctgctc ctcgcaggtg aggctggtag
      601 aggcgtaggt ccagggaaag gaccggccgt gttgtttgat ggcttcactg aggagagtca
      661 aagtgttgtt ggtgttgaac ttgatcgcgg tggccggctt cgtgatcttt ttggctaagt
      721 gtcggcctat cgcggtgcgc agcggagacg ccttccacga gatccggcct cgcgcagagg
      781 tggccaacct cagcgcgcac agtgccagcc ccatccagga tgcagtcctg aagcgcttgt
      841 cgctgctgga ggacatcgtc taccggcaac ttaatggctt atctaaatcc ctcgggctca
      901 tcgaagggta tggtgggcgg ggcaaaggag gccttcctgc caccctttcc ccctctgaag
      961 aagaaaaagc caaaggacct catgagaagt atggctacaa ttcctacctc agtgaaaaga
     1021 tctccttgga ccggtctatt ccagattatc gccctaccaa gtgtaaggag ctcaaatact
     1081 ccaaggagtt accccagata tccatcatct tcatcttcgt gaatgaggcc ctgtcagtga
     1141 tactgcggtc agtccacagc gccgtcaatc acacgcccac acacctgctg aaggagatta
     1201 tcctggtgga tgacaacagc gatgaagagg agctgaaggc ccccctggag gaatatgtcc
     1261 acaaacgcta tcctgggctg gtgaaggtgg tacgcaatca aaagagagag ggcctgatcc
     1321 gagcacgcat cgagggctgg aaggtggcca ctggccaggt cactggcttt ttcgacgctc
     1381 acgtggaatt cactgctggc tgggctgagc ccgttctgtc ccgcatccag gaaaaccgga
     1441 agcgggtcat cctcccctcc atcgacaaca tcaagcagga caacttcgaa gtacagcgct
     1501 atgagaactc cgcccacggg tacagctggg agctgtggtg catgtacatc agccccccga
     1561 aagactggtg ggacgccgga gatccctctc tccccatcag gacaccagcc atgattggct
     1621 gctcgtttgt ggtcaacagg aaattctttg gtgaaattgg tctgctggac cctgggatgg
     1681 atgtgtatgg aggagagaat attgaacttg gaatcaaggt atggctctgt ggcggcagca
     1741 tggaggtcct tccgtgttca agggtggccc acattgagcg gaagaagaaa ccgtataaca
     1801 gcaacatcgg cttctatacc aagaggaacg cactccgagt agccgaggtc tggatggatg
     1861 actacaagtc acatgtgtac atagcgtgga atctgcctct ggagaatcca ggcatcgata
     1921 tcggcgacgt ctcagaaaga aaggcattaa ggaaaagttt gaagtgtaag aacttccagt
     1981 ggtacttgga ccatgtttac ccggaaatga gaagatacaa caacaccatc gcatacgggg
     2041 agcttcgtaa taacaaggcc aaggatgtct gcctggacca ggggccactg gaaaaccaca
     2101 cagcaatact ctacccatgc cacggttggg gaccacagct cgcccgctac accaaggaag
     2161 gcttcctgca cttgggtgct ctggggacca ccactctcct ccctgatacc cgctgcctgg
     2221 tagacaactc caagagccgg ttgccgcagc tcctggattg tgacaaggtc aagagtagct
     2281 tgtacaagcg ttggaacttc atccagaatg gagccatcat gaataagggc acagggcgct
     2341 gcctagaagt ggagaaccgg ggcctggccg gtatcgacct aatccttcgg agctgtacag
     2401 gacagagatg gacaatcaag aatcccatta agtagatgaa cagaaggagg gcacatggag
     2461 cccagaccca cggcggggcc tggtcatcct cagaaccagc cacacggtgg agagacagca
     2521 ggcacccaga ggatgctctg tggacctctc agggctcctc cagggcagcc ccggacaaag
     2581 gtgttaagtc cccctcaggc gttctgcctg tatactttga agatttcccc ctcactctta
     2641 tctggggacc aagagctgca acttctgggt actaaggggt gaggctgctc atatctctcc
     2701 accgtatcat ctaccccagc atcagcagct gggactggca gggtccctct tcctctcctc
     2761 ctcctcttct tcctcttctt ctcttccttt tcctcctccc attctctttc tcttctctct
     2821 cttttcctcc ttccattctc tctcttaccc tctctccttt cttttcctcc ctccttccct
     2881 tttcttcctc ctcctacccc ctctctcttc cccctctttt cctccctccc tcttcctcct
     2941 cctcccattc tctctctctt ctcctctttc cttccctctt cctcctcccc ttctctcccc
     3001 cctctcttcc tccctcctgc tcctcctcct cttcctcccc attctctctc tctcccccct
     3061 cctctcttct cttctcttcc cccgccccat tctttgctgc agctgctttg tgtaattcac
     3121 cctggacctc caagacatgg gggtcaatga tggctttagc cacatcctag ctcctccctc
     3181 ttggagaagc aagcagtgag acccccaagg cttcatttct cctgaggaca ctttggccca
     3241 gaggcctgtt tgcatcccaa ggcagcagcc actcgagacc ttcccagtaa ggtggctttg
     3301 ggacaacggt tctggactcc tctggattgt tcctgaggtt ccctgtccca gtcacctgga
     3361 gtcctaaata cgaacaacat cagcacttga gcctgtgtct ggagagagcc ggaagtctgc
     3421 tgagcatgct ggatgctctc agcatctggc tgggacagct ccgcctgcca agggtgaggt
     3481 gctctctggt tttgtggagc agcaagggtc ttccgtgcag gacataagga ctgaagatgg
     3541 gcacagggcc ctctgcgccg cttactgctc agttcatttc accccatgct ttgctgactg
     3601 atgggggaca gaagcggcca ttttcctctt ttaagagtga ctgcttcttt ccaattgccc
     3661 tctggttagg gtgcacttat aaatcagagt taatatatgg atgcgtctgc atgcacgggg
     3721 aagcgagaga gtgcctgcct gagtgatgcg tgtggctggg tgtgtgtttg tgtgcttgag
     3781 tgtgtgagtg tgctcaagaa ctagtcttgg gcttgtagct tcattgctca gtggataggg
     3841 acagggatgc ctagaagaat gggggtgggc atgtccctgg atcacgggcc caggggacat
     3901 ggctgggttt tatgtgctag ggtacccttt ctctatcccc tcccccaatc ccttactgtc
     3961 cttggccatc ttctgcccag agccaaaccc tgtaggtgcc cagtgtggga tccagtatct
     4021 catgtggtgg tatctttatt ggtgatcatc tcctcgcccc accctacccc caccttgtga
     4081 aataaatatg tcagcaatcc cacaatgcaa ccttcggcct catccgctct ttgggttttg
     4141 tattgtttgc ttttgttgct gttactttgc agttggggtt taaatcgaac tcaagtactc
     4201 tacccccaaa atccatatcc ccgacaaata agcttgactc ttcccatacc caatgacaat
     4261 aggagaattt ctgagacaca gtgaagcatt tttggggttt aaaggcagtt gaagcttgtt
     4321 ctgtttggag acaaagcctc agtctaaaag accagggata gaaatgccct gacaataaag
     4381 caggttaggg gaggagaggg tttacctggc ccataattcc aggttacaat cgatcatttc
     4441 agggaagttg aagcaggaat ctgaagcatc tggttacgtt tatgtccaca gtcaaagtca
     4501 gagagaaatg aatgcatgtg tgtttgcttg tgttcaactc agcttctctg cttttataaa
     4561 gtccagggtt tcctgcctag ggaatggtat tgcccacagt gggttgtgtc ttcccaaatg
     4621 gattaacttc actaagacat cttagacctt cccagtatag actattccta ttgagactct
     4681 ctttctgggt gattctagat tgagtcaag
//
