LOCUS       NM_001100863            3857 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus polypeptide N-acetylgalactosaminyltransferase 16
            (Galnt16), mRNA.
ACCESSION   NM_001100863 XM_001053416 XM_343087
VERSION     NM_001100863.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3857)
  AUTHORS   Raman,J., Guan,Y., Perrine,C.L., Gerken,T.A. and Tabak,L.A.
  TITLE     UDP-N-acetyl-alpha-D-galactosamine:polypeptide
            N-acetylgalactosaminyltransferases: completion of the family tree
  JOURNAL   Glycobiology 22 (6), 768-777 (2012)
   PUBMED   22186971
  REMARK    Erratum:[Glycobiology. 2015 Apr;25(4):465. PMID: 25715345]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On or before May 13, 2010 this sequence version replaced
            XM_343087.4, XM_001053416.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.27330.1,
                                           SRR26360176.976890.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-336               JAXUCZ010000006.1  105901700-105902035
            337-494             JAXUCZ010000006.1  105951312-105951469
            495-593             JAXUCZ010000006.1  105954541-105954639
            594-661             JAXUCZ010000006.1  105955174-105955241
            662-727             JAXUCZ010000006.1  105956089-105956154
            728-849             JAXUCZ010000006.1  105958411-105958532
            850-937             JAXUCZ010000006.1  105961683-105961770
            938-1022            JAXUCZ010000006.1  105963925-105964009
            1023-1126           JAXUCZ010000006.1  105964313-105964416
            1127-1253           JAXUCZ010000006.1  105968717-105968843
            1254-1346           JAXUCZ010000006.1  105970689-105970781
            1347-1430           JAXUCZ010000006.1  105972048-105972131
            1431-1572           JAXUCZ010000006.1  105974977-105975118
            1573-1698           JAXUCZ010000006.1  105975733-105975858
            1699-3857           JAXUCZ010000006.1  105979881-105982039
FEATURES             Location/Qualifiers
     source          1..3857
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..3857
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /note="polypeptide N-acetylgalactosaminyltransferase 16"
                     /db_xref="GeneID:362760"
                     /db_xref="RGD:1310202"
     exon            1..336
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             160..1836
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /EC_number="2.4.1.41"
                     /note="polypeptide N-acetylgalactosaminyltransferase-like
                     1; putative polypeptide
                     N-acetylgalactosaminyltransferase-like protein 1;
                     UDP-N-acetyl-alpha-D-galactosamine:polypeptide
                     N-acetylgalactosaminyltransferase-like 1;
                     UDP-N-acetyl-alpha-D-galactosamine:polypeptide
                     N-acetylgalactosaminyltransferase 16"
                     /codon_start=1
                     /product="polypeptide N-acetylgalactosaminyltransferase
                     16"
                     /protein_id="NP_001094333.1"
                     /db_xref="GeneID:362760"
                     /db_xref="RGD:1310202"
                     /translation="MRKIRANAIAILTVAWILGTFYYLWQDNRAHAASSGGRGAQRAG
                     GRPEQLREDRTIPLIVTGTPSKGFDEKAYLSAKQLKPGEDPYRQHAFNQLESDKLSPD
                     RPIRDTRHYSCPSLSYSSDLPATSVIITFHNEARSTLLRTVKSVLNRTPAGLIQEIIL
                     VDDFSSDPEDCLLLTRIPKVKCLRNDKREGLIRSRVRGADVAGASVLTFLDSHCEVNV
                     EWLQPMLQRVMEDHTRVVSPIIDVISLDNFAYLAASADLRGGFDWSLHFKWEQIPLEQ
                     KMTRTDPTKPIRTPVIAGGIFVIDKSWFNHLGKYDAQMDIWGGENFELSFRVWMCGGS
                     LEIVPCSRVGHVFRKRHPYNFPEGNALTYIRNTKRTAEVWMDEYKQYYYEARPSAIGK
                     AFGSVATRIEQRKKMDCKSFRWYLENVYPELTVPVKEVLPGVIKQGVNCLESQGQNTA
                     GDLLLGMGICRGSAKSPPPAQAWLFSDHLIQQQGKCLAATSTLMSSPGSPVVLQSCNP
                     KEGKQKWRRKGSFIQHSVSGLCLETKPAQLVTNKCQADAQAQQWQLLPHT"
     exon            337..494
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /inference="alignment:Splign:2.1.0"
     exon            495..593
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /inference="alignment:Splign:2.1.0"
     exon            594..661
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /inference="alignment:Splign:2.1.0"
     exon            662..727
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /inference="alignment:Splign:2.1.0"
     exon            728..849
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /inference="alignment:Splign:2.1.0"
     exon            850..937
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /inference="alignment:Splign:2.1.0"
     exon            938..1022
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1023..1126
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1127..1253
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1254..1346
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1347..1430
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1431..1572
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1573..1698
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1699..3857
                     /gene="Galnt16"
                     /gene_synonym="Galntl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccccccccca accaccacca ccacctctct tttttctgct ctgcaggact gagcagccgg
       61 gcgtaagcga taacaaacgg ctgggacagc aagctccact gccccggctc tgagagcacg
      121 ccggccccgg gccccacgcg gggcgcccgt ccgcccacca tgaggaagat ccgcgccaat
      181 gccatcgcca tcctgaccgt agcctggatc ctgggcactt tctactactt atggcaggac
      241 aaccgagccc atgcagcatc ctccggcggc cgcggcgcgc agagggccgg aggcagaccg
      301 gagcagctcc gcgaggaccg caccattccg ctcattgtga caggaacacc gtcaaaaggc
      361 tttgatgaga aggcgtacct gtcagccaag cagctgaagc ctggagagga cccatacaga
      421 caacatgcct tcaaccaact ggagagtgac aagctgagcc cagaccgacc tatccgggac
      481 acccgccatt acagttgccc atccttgtcc tattcctcgg acctgccagc caccagtgtc
      541 atcatcacct tccacaacga ggctcgctcc acactcctgc gcacagtgaa gagtgttctg
      601 aaccgaactc ctgccggctt gatccaggag atcatactag tggatgactt cagttcggat
      661 cctgaagact gcttgcttct gaccaggatc cccaaggtca agtgccttcg aaatgacaaa
      721 cgagaaggat tgatccggtc ccgggttcgt ggggcagatg tggcaggagc ctcagttctc
      781 acttttctgg atagtcactg tgaggtgaac gtcgagtggc tgcagccaat gctgcagcgg
      841 gtgatggagg accacacccg tgtggtgagc cccatcattg acgtcatcag cctggacaat
      901 tttgcttacc tggcagcatc tgcagatctt cgaggaggat tcgactggag tctgcacttc
      961 aagtgggagc agatcccact ggagcagaag atgacccgga cagatcccac caaacccatc
     1021 aggacacctg ttatagctgg aggaatcttc gtgatcgaca agtcctggtt taaccacttg
     1081 ggaaagtatg atgcccagat ggacatttgg ggaggagaga attttgaact ctccttcagg
     1141 gtatggatgt gtggtggcag cttggagatt gtgccctgca gccgagtggg ccatgtcttc
     1201 aggaagcggc atccctacaa cttccctgaa ggcaatgccc taacctatat caggaataca
     1261 aagaggaccg cagaggtatg gatggacgag tacaagcaat actattatga ggcccggccc
     1321 tcggccatcg ggaaggcctt tggcagtgtg gccacacgga tcgaacagag gaagaagatg
     1381 gactgtaagt ccttccgctg gtacctggag aacgtctatc ccgagctcac tgtcccagtg
     1441 aaggaagtgc tccctggtgt cattaagcaa ggagtcaact gcttagaatc ccaaggccag
     1501 aacacagctg gtgacctcct gcttggaatg gggatatgca gagggtctgc caagagccct
     1561 ccaccagccc aggcatggtt atttagtgat caccttatcc agcagcaggg gaaatgtctg
     1621 gctgccacct ccaccttaat gtcttccccc ggatccccag tagtactaca atcatgtaac
     1681 cctaaagaag gcaagcagaa atggagaagg aaaggatctt tcatccagca ttcggtcagt
     1741 ggcctctgcc tggagacaaa gcctgcccag ctggtgacaa acaaatgtca ggcagatgcc
     1801 caggcccagc aatggcaact gctgccacac acatgagggt agcccccagc ctcctgtacc
     1861 ttctgcatga gacttgggga ccggaagggg ttagggtggg ggagtgtcaa gcgggctatt
     1921 ttccatctcc tcacatttct actgggtcat cggtacacac cccaaccacg catttctcca
     1981 aagctagttc agacagggtg caggggcatg ctccatgccc tctgtgccac cccagtctta
     2041 ccctgggaga ggagatggtt agtacgcagc tgtcctgggc agagatgtgg cagctgctcc
     2101 tggccctttg tcttctccct tggccctact ggggctccag gcaatggtgt gtgggcattg
     2161 ccctgttgcc caagggagac aaggacagaa acctgcagaa gagccaagtt gggtcacggg
     2221 gctagcctga agtcaacaca agaggacagg tggcatcgtg aagctgaagg caaggcagct
     2281 agagagcaga aagggttgag aggctccgtc cagtgggcgg gcgagggagg gatgcatcct
     2341 gggagcagag gatggggatt cacggaagac catggataga gaagcagcca gctgtgatgt
     2401 gccagaaaac caaggtctct ttccaggaca tcctcctgtt cctgagcccc aggccccaag
     2461 cccagcatat gcctgcagcc cctctaggtg accgcattct tagcaaaaag ctggagaggg
     2521 atctggggta taatttatta agtagactcc acttccgctt agctatatgt caagccaaga
     2581 cctcacgctt gggcctgtcc cctctaactg gctcccagtc atgcaccctg aaataccctc
     2641 atctttactg ttttgggctc ccactttttc agaggtcttt gcctctataa acacagcgtc
     2701 atggggcagg gtggctagtc ggaattggac cccctttctg gagtaaaacc attcccagtc
     2761 agtagagacc aagccaccca gatcaaaact tcatgcaaag acctctcgcc gaaagccagt
     2821 ggttgtagta ggctgcaaag ctggctagtg gctcttgtct gtgtgcagaa taacctgctc
     2881 tctactctcc cgctactaag aacacggagg ctataggttg ctatcattct gggatcctgt
     2941 cctcctcacc attggcttac aaccgcataa tcttgggtaa aagaccccag aattcttggg
     3001 gtctcttaca ccaaagcaag cccgccaaag gagaccagtc ttaccccagg agcacccagt
     3061 ctttcataaa ccagacagcc agagattcat agggagtcta cacagtccag aaagactaaa
     3121 agtctccaga atattgcgta tgcatacaca tatgcaatta cataggtgga ggtagagcct
     3181 ggatcttccc tgcttcctgg tttccaaagg atctgatcct ctgctctgga ctagcactac
     3241 cagccatgtg ggtctctgcc ccccatctcc ctctctgctg gggcccagcc tgtacatcac
     3301 caggtgttaa acaccaagta cctggtttgt agttctggaa cgttctccag cagtttcctt
     3361 gcacctctgg ctctcaccag catcctctca gctgttctgt gccaaatatg tctgcagccc
     3421 tgggctcagc acaggggccc ctcacctggg cagtgactga gcttcgccca tcctgttacg
     3481 atgtcttatg tacaccctgc tatttacaga cctggcctcg gatcatgtga ccctccggga
     3541 agagtccaga gaactgaggc taaggcggag gcttttctct agaggcttgg gccctgttcc
     3601 gacgtggact ttggggctag gaacctgggc ttctctctgt gaatgtaagg acagctactc
     3661 agagagcctt ggtgggggcc tctccccatt tcctggggtc agacccgctc agcacttggc
     3721 agctgccccg tgtggggact cagtccaact ctgtttttgc ttttcttctt gaccaaagca
     3781 tgtgccaccc agttgtccaa aaggacaccg tctttatgaa acacacctgg aataaaacca
     3841 cttcttacat gtccaca
//
