LOCUS       XM_039094906            5214 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus polypeptide
            N-acetylgalactosaminyltransferase 15 (Galnt15), transcript variant
            X1, mRNA.
ACCESSION   XM_039094906
VERSION     XM_039094906.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094906.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5214
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5214
                     /gene="Galnt15"
                     /note="polypeptide N-acetylgalactosaminyltransferase 15;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 10 ESTs, 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 27 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100360475"
                     /db_xref="RGD:2322081"
     CDS             603..2627
                     /gene="Galnt15"
                     /codon_start=1
                     /product="polypeptide N-acetylgalactosaminyltransferase 15
                     isoform X1"
                     /protein_id="XP_038950834.1"
                     /db_xref="GeneID:100360475"
                     /db_xref="RGD:2322081"
                     /translation="MNSPGSVTTLKLPGAQGRSKLDQDLLLQAGGCDMLLRKRPRNGH
                     SRLQFLLLFLTLGCVLMMVIMLHPPPPTLHQAVTAQASKHSPDMGYRLDFGDSQEWVL
                     EAEGEGEGEEYSFLDGLPPFISLQEDQLLVVVASPRARRNQSQGRRHGSYQLIKHMSR
                     RPDEEASERDWRTEEDGEESEEEALTPLGLDPDGLNKPLSARLPLRRVLPEARHPLCL
                     QQHPPSGLPTASVILGFHDEAWPTLLRTVHSILDTAPRALLQEIILVDDLSQQEPLKS
                     ALSEYVAKLEAVKLLRSNKRLGTIGARMLGATRATGDVLVFMDAHCECHPGWLEPLLS
                     RIADDRSRVVSPVIDVIDWKTLQYSASKLQRGVLDWKLDFQWEPLREQELKALPSPIS
                     PVRSPVVPQEVVAVDRHYFQNTGAYDPLLSLWGSENLEMSFKAWLCGGSVEILPCSRV
                     GHLYQSQDASLRTDPEVILKNKIRIAETWLSSFKETFYRHIPEAFALSKVAKPDCTER
                     LKLQRRLGCRTFHWFLANVYPELYPSEHRPRFSGKLHSTGLGLCADCRAEGDLLGCPM
                     TLAPCSNNRQQQNLEHTSRKEILFGSPQRLCFDVRGERVILQNCTEEGPAIHQQHWDF
                     QEDGLIIHVLSGKCMEAGVRPSSKDLYLRQCDGKTSQLWRFDQIHPVDER"
ORIGIN      
        1 ttctccttcc tgctcttctg ggtggggaga gatgccctcc ctatgaatgg tgttcaagcc
       61 tgatctcctg ggagggtgct gttttggaca ggctcttggg gtgacgctgt gtggctgtgg
      121 aaagcttggg gaagccaggg cattaggacc aggagcgaga agcacgcttg gctcccccgt
      181 tgtgtctggc agagggctcc tgcagagctg gaagtatgtg tgacaggaaa cccggacagc
      241 gcctgctggc tttacatctg ttgctctgac ctgactcaag gcatccaaag gaggatgtct
      301 gtcatcttga cttgactgaa cccctcagca actcacccca gacagtccgt agaacctgca
      361 ctcaggcaga gggggaaaga gcatgaggct aatcaccaga gcaagatgga caagaacagg
      421 gtaagaggag agacaacagc cagagaccct tctcagaaga cacctaatac tcagagagga
      481 cccaggaccc caggctccgg tggttttctg attccagggg gcagccggtc ttcccaacgc
      541 tgtcagtaaa tgtctggtgg ggtaaaagga gcaggtgact ggcacaaaac cttttggctg
      601 gaatgaacag cccaggttca gttacaacct tgaagctacc tggagcacaa ggaagaagca
      661 aacttgatca ggacctgttg cttcaggctg gtggctgcga catgctcttg aggaagcgac
      721 ccaggaatgg acattccagg cttcagttcc tcctactctt tctgactcta ggatgtgtcc
      781 tgatgatggt gatcatgctg catcctcccc cgcccaccct gcaccaggct gtcacagccc
      841 aggccagcaa acacagccct gacatggggt atcgcctgga ctttggggac tctcaggagt
      901 gggttctgga ggctgagggt gagggtgagg gtgaggaata cagtttcttg gacggcctgc
      961 cacccttcat ctccctgcag gaggatcaat tgctggtggt cgtggcctcg cccagagcta
     1021 ggaggaatca gagtcagggc aggagacacg gcagctacca gctcatcaaa cacatgagca
     1081 ggaggccgga tgaggaagcc tctgagaggg attggaggac agaggaggat ggggaggaat
     1141 cagaagaaga ggcactgacc ccacttggcc tggacccaga tggcctcaac aagccactca
     1201 gtgcccgcct gcccctgagg agagtcctgc ctgaggcacg gcacccgctg tgtctgcagc
     1261 agcaccctcc aagtggcctg cctacggcca gcgtcatcct cggcttccat gacgaggcct
     1321 ggcctacgct cctgagaact gtgcacagca tcctggacac cgcacccagg gccttgcttc
     1381 aggagatcat ccttgtagac gacctcagcc agcaagaacc actgaagtct gctctcagcg
     1441 aatacgtggc caagctggag gctgtgaagt tgctcagaag caacaagagg cttggcacca
     1501 tcggggcccg gatgctgggg gccaccaggg ccacaggaga cgtgctggtc ttcatggatg
     1561 cccactgtga gtgccaccct ggctggctgg agcccctcct cagcagaatc gctgatgaca
     1621 ggagccgagt ggtgtctcca gtcatagacg tgatcgactg gaagacactt cagtactctg
     1681 catccaagct gcagcgaggg gtgctggact ggaagctgga tttccaatgg gagcccctga
     1741 gggagcagga gctgaaggcc ctcccatccc ccatcagccc tgtcaggagc cctgtggtac
     1801 cccaagaggt ggtggctgtg gacagacatt acttccaaaa caccggagct tatgatcccc
     1861 ttctgtcact gtggggtagt gaaaatctcg agatgtcctt caaggcctgg ctctgcggtg
     1921 gctctgttga aatccttccc tgctctcgag ttggacacct ctaccaaagc caagatgcca
     1981 gcctcaggac tgaccccgag gtcatcttga agaacaagat ccgcattgcc gagacctggc
     2041 tgtcatcctt caaagaaacc ttctacaggc acatcccaga ggcctttgcc ctgagcaagg
     2101 ttgcaaagcc agactgtacg gagcgcctga agctgcaaag gaggctggga tgccgaacgt
     2161 tccactggtt tctggccaat gtctaccctg agctgtaccc atccgagcac aggcccaggt
     2221 tctccggaaa gctccacagc actggacttg gcctctgtgc agactgccga gcagaaggtg
     2281 acctcctggg atgccccatg acactggctc cttgcagtaa caaccggcag caacagaacc
     2341 tggagcacac cagcaggaag gagattctct tcggcagccc acagcgcctg tgcttcgatg
     2401 tcagaggaga gcgggtgatt ctgcagaact gcaccgagga aggccctgcc atccatcaac
     2461 agcactggga cttccaggag gatggactga tcatccacgt tctatctgga aaatgcatgg
     2521 aagccggggt tcggccaagc agtaaggatc tgtacttgcg tcagtgcgat ggtaaaacca
     2581 gccagctgtg gcgattcgac cagatccacc ccgtggatga acgatgagta aactggacag
     2641 acagcaaacg aatgttggac atcacatttc tctgctctcg tgtatcctga ggcagccccc
     2701 tagtgtctgg gcttctggaa tagaagagaa gaaactccac taaaacaaac aaacaaacaa
     2761 caatgaaaac atagaaaatc tctccaggta ccttacgtca ttgattgttg actggttttt
     2821 gttgtttggt gcggttttac aagacagggt ttctctgtgt agccctggct gtcctgaaac
     2881 tcactctgta gaccaggctg gcctgaaaca catagcagtc cacctgcctc tctgcctctc
     2941 aagtgctggg actaagagag acaccaccac ctggctatgt tggctgtatt tttttagaaa
     3001 gaaaaacaat ggattcattg tcttcatcac cggacgtgat catcttgaag gagtcagact
     3061 cttcccctct ccctccccac accctgccca ccatgaacac tgagccctca ctcactttta
     3121 tccctgtctg tgggaagagg cctaggcatt gtctgatagc acttccggga gtcatgaaac
     3181 ccagtagata aatttcacgt agcctttact cagacaatgt atgtggccag ttgtgagagt
     3241 tagaacgagg gctgtgcaaa tggcctggca gccccaacct tctgaccagg tttactagca
     3301 tacattcatg ttcatctgtt gaacccaagt tcaaaagaag cagaggggta cagggaggaa
     3361 tggggatggg gtggggaaga agacaggaga gagattcagt ccaattgtcc agcttagcat
     3421 cgcccagtga agagtcagca gacctggcta agaccttttc gtcttcagga cagttccctt
     3481 ggaactttct acctccattc tcctgctcta gctcttctct aactcacaac cagatttcct
     3541 gcagtgtgcg ctttcttggg tcaccagtgt tggaagggtc agctcctctg accactctcg
     3601 tgaacgaatg aattacaggg aaagcaatgc ccgcttagga gagccacgtg ggcttgatga
     3661 gaaatagcaa cttttgaaag ggggaaaccc aaattcttta caaggcaaac tagatctggc
     3721 tattaaatgt ccctgcggtt tgacaggcca cctatgagcc caaaacaatt gttcaagact
     3781 ccctaaatgt ggctaccagt taaatgctca catggttgaa ggaaatccac cgtaaccaga
     3841 gaagaaccta ggctcagcca aaagagttgc tgagttagga tgaagttgga aaaagaatct
     3901 tgcccatttc tttctgaatg gaattagctt tctatacggt aagcttagag acttcccatt
     3961 aaagatgtcc ttgtcctctg ggctgtctcc aaatacagtt gtttcaaata agaactggag
     4021 aaggcctgtg ggtttctgaa atacctgagt aatatctcca acttccaggt gagtgccccc
     4081 tgtttctcta gcctcagagt cattctagat taatactatc taatatcgtg accacaaatc
     4141 cagtgtggcc attttgatga aaattcacca caattctgga aattttcaaa ccgttccttg
     4201 attgggctgg cactttaggg gttgggtagc cacctgagaa cataatgata aaacagccct
     4261 ccatcacaaa aaggagtcct ggatagctct agatagattc atcccctacg tagggacaag
     4321 agtttggcca ccatcttctt gcttcagacc tgtctatatt taaaacaaat tacttctaac
     4381 atgatgaggc tgggatggag ctaaaagttt caaatggcaa ccttgtaaag ggtagtaatg
     4441 gttgaacaat atttttaaag acttttattt tgaaatgaat tctaatatta gcattgtgag
     4501 tagctgaagt tgttgggata aattaatgta gctaagtaaa aggctaagtg ctatcgcgtg
     4561 tgttctggtg attaaggaaa ggacccacat agctcattgc ttaattgttt taacaaaaca
     4621 agagtgtgac gtttctcata cccttaacta tcccccacga tttattgttt tattacagaa
     4681 atggccgtca actcagtccc tggctggttc ttacagaccc ttaatttaaa tagcacagac
     4741 gcttctgaaa agcaatctcc ttacagtgta actggtgtag tggattctta tcaatggtcc
     4801 gtttagaaag agagaaactt ggcagcgaat ggatctggtt cccgggtttg attttgcttg
     4861 tctgtctgaa ttttgtgact ctttcaaaca ggagttgttt ttgtgatttg tctcacaaag
     4921 cccacctcca tgatcaagga tcctgctgga gtggatggag agaactgagc acctagcaga
     4981 catagtccat actctttgtg ttgtgacaac agatgtcaat caagaagggg cacgcacgat
     5041 gtggtcctct tctgcctcaa tgtcataaac ccgtggcaaa gtctgagtcc caacttccac
     5101 agaactctga tgctatgagc atctgaactg tgatgctgcc gctgtgcaga aagggccatg
     5161 gatggaagta aacgagtggc cagggttgtg ttttaataaa acttggcaga aata
//
