LOCUS       XM_017591676            7522 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus polypeptide
            N-acetylgalactosaminyltransferase 13 (Galnt13), transcript variant
            X5, mRNA.
ACCESSION   XM_017591676
VERSION     XM_017591676.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017591676.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017591676.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7522
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7522
                     /gene="Galnt13"
                     /gene_synonym="T13"
                     /note="polypeptide N-acetylgalactosaminyltransferase 13;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 17 ESTs, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 39 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:311039"
                     /db_xref="RGD:735044"
     CDS             542..2212
                     /gene="Galnt13"
                     /gene_synonym="T13"
                     /codon_start=1
                     /product="polypeptide N-acetylgalactosaminyltransferase 13
                     isoform X3"
                     /protein_id="XP_017447165.1"
                     /db_xref="GeneID:311039"
                     /db_xref="RGD:735044"
                     /translation="MRRLVYCKVVLATSLMWVLVDVFLLLYFSECNKCDDKKERSLLP
                     ALRAVISRNQEGPGEMGKAVLIPKDDQEKMKELFKINQFNLMASDLIALNRSLPDVRL
                     EGCKTKVYPDELPNTSVVIVFHNEAWSTLLRTVYSVINRSPHYLLSEVILVDDASERD
                     FLKLTLENYVKTLEVPVKIIRMEERSGLIRARLRGAAASKGQVITFLDAHCECTLGWL
                     EPLLARIKEDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDR
                     RKGDRTLPVRTPTMAGGLFSIDRNYFEEIGTYDAGMDIWGGENLEMSFRIWQCGGSLE
                     IVTCSHVGHVFRKATPYTFPGGTGHVINKNNRRLAEVWMDEFKDFFYIISPGVVKVDY
                     GDVSVRKTLRENLKCKPFSWYLENIYPDSQIPRRYYSLGEIRNVETNQCLDNMGRKEN
                     EKVGIFNCHGMGGNQVFSYTADKEIRTDDLCLDVSRLSGPVIMLKCHHMRGNQLWEYD
                     AERLTLRHANSNQCLDEPSEEDKMVPTMQDCSGSRSQQWLLRNMTLGT"
ORIGIN      
        1 ccggcggagg gggcgggggc caagtgacca ggcggtggcg gctctgccga ggtgacaatg
       61 tgctaggagc cccgctccgt gtctcctgcg cctcctcggc ctgggcgcct cctgtcagcg
      121 ctctcggagc ctcgcggccg cctgccgcgc tatgagggag cgtctccggg gctggccgag
      181 gccggggccg cctcgctctg ctcgccgaga agtgtgaaga gaggcgcggg cgggagccct
      241 ggctgcgcgc ggcggcggct ccaggtgagc gcggatctca gagcagccgg ccactgaccc
      301 gtctggatct aggcagcatc ccaagcgggg accgcggagc tctctccgag ggatcaacag
      361 ccaccatagc aggtatattt tgtaggagta ttttgaagat ggatattttc aaatcatttt
      421 gaaatagtca aacaccatat acatgggatg catcttgctt ttgtcctgga gatcacctct
      481 gtggcttgga tttatctcag gaccattcgt cttcagtctg cgtgttaatt agaaatcaag
      541 catgaggaga ctcgtctact gcaaggtggt tctggccact tcgctgatgt gggtgcttgt
      601 cgatgtcttc ttactgctgt acttcagcga gtgtaacaag tgtgatgaca agaaggagag
      661 atccctgcta cctgcgctga gggctgtcat ttcaagaaac caagaaggtc caggagaaat
      721 gggaaaggct gtgctcattc caaaagatga tcaagagaaa atgaaagagt tgtttaaaat
      781 caatcagttt aacctcatgg ccagtgactt gattgctctt aaccgaagtc tgccagatgt
      841 gagattagaa ggctgcaaga ctaaagtcta ccctgatgaa cttccaaaca caagcgtcgt
      901 cattgtattc cataatgaag cttggagcac tctacttaga actgtctata gtgtcataaa
      961 tcgctcaccg cactacctgc tctctgaggt catcttggtt gatgatgcca gtgaaagaga
     1021 tttcctcaag ttgacattag agaactacgt gaagacttta gaagtgccgg tgaaaattat
     1081 caggatggaa gaacgctccg ggttaatacg cgctcgtctc cgaggagcag ctgcttcaaa
     1141 aggacaggtc ataacttttc tggatgcaca ctgtgagtgc accttaggat ggctggagcc
     1201 cttgctggcg agaataaagg aagacaggaa aacagttgtg tgcccaatca ttgatgttat
     1261 tagcgatgat acctttgagt acatggctgg ttcagacatg acttatggtg gttttaactg
     1321 gaagctaaat ttccgatggt atcctgtccc tcaaagagaa atggatagga gaaaaggaga
     1381 caggacctta cctgtcagga cccctactat ggctggtggc ctattttcta ttgacagaaa
     1441 ctactttgaa gagataggaa cttacgatgc aggaatggat atctggggtg gagagaatct
     1501 tgaaatgtct tttaggatct ggcaatgtgg aggctctttg gagattgtga cttgctctca
     1561 tgtcggtcat gtttttcgaa aggcaactcc atacaccttt cctggtggca ctggccatgt
     1621 cattaacaag aacaacagaa gactagcaga agtttggatg gatgaattca aagatttctt
     1681 ctatatcata tccccaggtg ttgtcaaagt ggattatgga gatgtgtcag tgagaaaaac
     1741 actaagggaa aatctgaagt gtaagccttt ttcttggtac ctagaaaaca tctatccgga
     1801 ctcccagatc ccaagacgtt attactcact tggtgagata cgaaatgttg aaaccaatca
     1861 atgcctagac aacatgggcc gcaaagaaaa tgaaaaagtg ggtatcttca actgccatgg
     1921 catgggaggt aaccaggtgt tttcttacac tgctgacaaa gaaatccgaa ctgatgactt
     1981 gtgcctggat gtatccagac tcagtgggcc tgtaatcatg ttaaaatgcc accacatgag
     2041 agggaatcag ctgtgggagt atgatgctga gagactcact ttgagacatg ctaacagtaa
     2101 ccaatgtctt gatgaacctt ctgaagaaga caaaatggtg cctaccatgc aagactgcag
     2161 tggcagcaga tctcaacaat ggctgctgag gaacatgacc ttggggacat gaagatcttt
     2221 tttcccaaga tgtgaaagtc tctactcatt tgtttgtcca ttatttcagt ttggtgaaaa
     2281 tcttaacttt gctgaattaa acgttttaaa aatactttta gtaatataaa acacagttgt
     2341 ttataattca tttttaggaa tgtttatttc cctactaaaa atttgtatct gattgaagaa
     2401 gcacataaaa tataaataat aagaaactgt tattaaacat ttcaattgtt tgggaaaaaa
     2461 aacaccttgt atttactttt aaaatgtctt cattagcctc ttgtcacaag gttacttggt
     2521 attgatttat ttggtgttct aataacaatt aaaagagaga tcatgtaatg ccttatacaa
     2581 tataataatt atgaaatatt aatgtagctt tataaaacac tctttttaca aaagctttat
     2641 gggaccctgg ttgaatttct atgccaacaa ttagaacaca taaaaaaatc attcctgagc
     2701 attgaattca tcaagcaaca tataaggtac taggaaaaaa attaagttag ttattaaatt
     2761 tgtgaaatat aaaatcatca tacaaaattg aaaaaacaat ttaaataata attttaaatc
     2821 aaatgatgta aggaatacat cgggtattga ggacgacaag agctatataa accacaagaa
     2881 ttgccgtgag agaatcttca atccaaacaa gctgaagatg gtcttgctct gaaacatgat
     2941 gtccggacct caatccccaa ttactctctg tttctgtaag ctctgccttt gtctgtcact
     3001 ctagagggtg agatttgtca cagcctacag aactgtaggt gaagggtgac cttttaagtt
     3061 tactttttaa actactatct cttttacttc agtcagtttt gtcattggct cgttgtattt
     3121 tacaaaatgt atgacactat caaaatttat tgctattcta tataatccaa cattggtcac
     3181 tggaaaaatt caagttacaa aagtgatatg aattaaacta ctagacatga ttttgtgtaa
     3241 actatggctc agtcataatt aggacaattt cttgtgtcat ttccacttaa aacccctttg
     3301 ttcacagtgc atgaactaaa tatatgaaaa agaaaaaaac taccaattca tgggatggta
     3361 gtaattgttt ctatttgcta tcattttaga tggtcgcgta gttattgtac atgaacgttt
     3421 tggttgttta tttagcagct ggaggaaatc tatgaaggtc aagatagaag attctccaga
     3481 aacagaaaat ccattctttt gaccttttag tttaaatgat cttctagaaa aaaaatgtta
     3541 attggcctgc tacacttgcc ttctctctct actccctctt tctatatatt tctctgattc
     3601 tctcctctgt gtctgttgtt ttcaccgtct ttctctctgt ttctgtctgt cttttccaca
     3661 aacaaacaca agcatgcaca tgcacaaaca cacacacaca cacacacacg cacaaacaca
     3721 cacacacaca cacacacaca cacacacaca cacacacaca cacacacaca cctgagctga
     3781 ggtagtatat ttatactgct tcagtctacc tacttcagtg gtctttctca tcagaacaaa
     3841 tgcacgtttc accttttgga tgctcaagtc agaactatga aattgagaat ttaggggtta
     3901 cccacttagt tggtgcttgc ccctcaacca agaggacctg attctgattc caagcaaaat
     3961 aaccaataga tgtggaggat gtgcttgtaa ctctaacact ggggaggaaa agaaaaagag
     4021 aatctcttga gtttccatgc caaccaggtt gtcttaatgg acatgttcca gaccaaatgg
     4081 gagaccaaac attgtcccta aaatcaagtg atatctttca aacttttcaa gcctgttcta
     4141 acagtagctc agaggcctta taaaactgcc tgctgtcaaa attaactagg atcttggccc
     4201 gacacaaaat ttaaactcgt ttgaaatttt cattttagag tgttttgata ccaagtattg
     4261 atttttgtaa atgacaatat tgttgcgatg taaaacgttg gacaaattga gtttaactat
     4321 ctcataatta acttgatacc acatttgaca taaagcagca aaggtaccac aaccaatgtg
     4381 cattactaat tcttaccttt taagtcatag ggaatatgca tataaatatg attatctatt
     4441 tatgccaagg cttacccaac gctatactta ttttcataat ataacagtca tagagatact
     4501 gttgtgtacg aatttgtgta tttccctgaa tgcaatgttc ccattaagcc tcaaatcatt
     4561 ttatagccat catgcttata tattcagaca aatacactcc atacacacat atatacatac
     4621 cctatacaga tggatatgta cacacataca cagaaacctc tatgtttctt atctctttct
     4681 gtcttgcatt tcattccatt gttctgactg ctaagcaagt ttctggtcta ctgttgttct
     4741 actagtccca aagatgccat tcagtttagt tctttaggtc tctattcaag cattacattt
     4801 tcagtacaag aaactcttgt ccttactgta atctctcact cctatctctc taagaacaaa
     4861 tctaagttta ctcttttgct taattcaact tcttccagtc tcatacacca acacacactt
     4921 gggcatacaa ttgcatttat ttatttattg ttttcaattc cagggccaca tctttgttaa
     4981 gtaagcacac taccactgat ctacacacac acattcacat gaatcctttt aaaggcaggg
     5041 tctatattat ttttgtccat tggctgtgtt cagcttctta tgctctctct tggattattc
     5101 taactactac tcttgaacta atacacttga gagtgtgttc atgttgttaa gcagcagagt
     5161 atcatatggt tccatgttta aaatttaaag tgtccagtaa tgtctttata gagactttca
     5221 gagcgttggt tcgaactgtt aattttcctt ctaatattct tgatattaaa gtatggactc
     5281 tatgttgtcc tttgtgttaa aatcaccagc tttatggaaa tgaaatacaa cattttatta
     5341 aaatcctatt ataagatata ttgcttcact taactaaaaa taattatagt ttcagtgttt
     5401 tggttgtatt agattgacca cagaagggct aagattttga gttgtagaaa gaagacaatt
     5461 acattctttt aaaatcatat ttattttcat ggtttgataa tgactataca aagtttattt
     5521 tcaatgtaaa aatctattaa ctaaagatat tatagaaatc ttaaaacatt aaagatgtta
     5581 tactattaat ttctatgttt atatataata aaactgagcc atggacatat actatagttt
     5641 tatcataatc atagagttac aaaactatat gcccaggact cctactactg ccaaaaacat
     5701 ataaggtcac aatgatggga aaaaagcctt tattaaaaac tcattattaa tttcatttgt
     5761 taaaaatgta taaattagta ttttttcata ctttaataaa atttgttcta tgaaataaga
     5821 caacaggtaa aaggagaaga cctgcagcag aacaatagaa caccctacgt cagtgggcaa
     5881 gaggtttgag aaagcagtat catgcctctt cagcagtaat ttattgaact cgggtttttt
     5941 tgtttgtttg tttgtttgtt ttgatttatt ttctctttta tgttttcttg taattccttt
     6001 caagcttcaa gtaaagctga cctacagctt gcacagagtg ttagaccatc aacccatatg
     6061 aacactgggg gagttctttg tttgaagctt tgtcaattac agagaaacca gcaaatatcg
     6121 atctctaggc ttcccagtgt cactttacta taaacatatc atgtaaattt cattttttct
     6181 ttagttctta gaaacatcat aataaattta aaaacctaag ggaagggaat gtaaactgtt
     6241 acaataaaaa taacataacc ttcttttaat gttttatttt taattcattg aaaggataca
     6301 aatatagtag attgcttcag caaacttcag gatattggct tgctccaaca tagattgtta
     6361 ctccatttaa gaagtggttg agcataatca ttgccatagc atttgcatct tatctatgga
     6421 ttcaagctgt catttcagag tggccaaaat acaatgcatt cttaaattgc aggtataatg
     6481 atttgaagaa ttataaaaaa aaattaaagt cttcagcaaa tgtgaatcat tgtctgtgag
     6541 atgttatttt gtagaactaa gaactcctag tcttgactga aggcccagtt tagctgagca
     6601 gcaggaattc aactgtatca aggcagcttg tgtttcggga tttagttact atccaccatt
     6661 atgtcagata tggggtgaaa gcactcagct attcttctct atagcacagg aacatctggt
     6721 ttgactgcac cctgttcaga gtggtatcaa gcatgatata ctgtacaaag ctaaagtgtt
     6781 ggataagctc tagcaatgtg tttgaaacta gttggtagag atttgttccc tcagtttttg
     6841 ttttaaagtg tttaatacat tctaaagaaa tttttcattg aatctgcatt caaaaattcc
     6901 ccctgagaaa gaagtgatgc aatacggtct tttgtcaata aatgtactcc agatgaggac
     6961 cacttctgtg ataattggct cattatgtac agtgatgctt tactgccatt gctaataggg
     7021 tacaatgaat cattctccca tgttgggtga tttagaataa aaaaatcgag agggttccac
     7081 ctcaaatata actgtttaaa aagtgaattt ttcattctgt gttcaattgg tgaggttaaa
     7141 aacttaaagc tactaacctt tgttcctggt gtacctacag ttaaaaatag ctcaagagag
     7201 aaaccagaat ccatagtcaa aagactttct ttgagtgggg tagagacctt ctctttttaa
     7261 aatcagtgtg tcaaagataa agaacataat ctcaaaaatg tttagacatg ctcaatgcag
     7321 tctttaacat ttataacagt agaatgtgca taaagattta aacattttaa gtgttgtaag
     7381 cattactaaa tgatataatt gttctttttc tgtaaattta aatatttata catttttgta
     7441 gaattaaagt atgccaattt agttttcctt ttggtatatg ttgtcttctt tcaaaataaa
     7501 ttttgctagt atttcaaaca ga
//
