LOCUS       NM_199106               2190 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus polypeptide N-acetylgalactosaminyltransferase 13
            (Galnt13), mRNA.
ACCESSION   NM_199106 XM_229928
VERSION     NM_199106.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2190)
  AUTHORS   Raman,J., Guan,Y., Perrine,C.L., Gerken,T.A. and Tabak,L.A.
  TITLE     UDP-N-acetyl-alpha-D-galactosamine:polypeptide
            N-acetylgalactosaminyltransferases: completion of the family tree
  JOURNAL   Glycobiology 22 (6), 768-777 (2012)
   PUBMED   22186971
  REMARK    Erratum:[Glycobiology. 2015 Apr;25(4):465. doi:
            10.1093/glycob/cwv003. PMID: 25715345]
REFERENCE   2  (bases 1 to 2190)
  AUTHORS   Zhang,Y., Iwasaki,H., Wang,H., Kudo,T., Kalka,T.B., Hennet,T.,
            Kubota,T., Cheng,L., Inaba,N., Gotoh,M., Togayachi,A., Guo,J.,
            Hisatomi,H., Nakajima,K., Nishihara,S., Nakamura,M., Marth,J.D. and
            Narimatsu,H.
  TITLE     Cloning and characterization of a new human
            UDP-N-acetyl-alpha-D-galactosamine:polypeptide
            N-acetylgalactosaminyltransferase, designated pp-GalNAc-T13, that
            is specifically expressed in neurons and synthesizes GalNAc
            alpha-serine/threonine antigen
  JOURNAL   J Biol Chem 278 (1), 573-584 (2003)
   PUBMED   12407114
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            [WARNING] On Jul 18, 2024 this sequence was replaced by
            NM_199106.3.
            
            On Nov 27, 2020 this sequence version replaced NM_199106.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY371923.1, SRR26643298.15886.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-240               JAXUCZ010000003.1  59383516-59383755
            241-409             JAXUCZ010000003.1  59568256-59568424
            410-576             JAXUCZ010000003.1  59672882-59673048
            577-784             JAXUCZ010000003.1  59674182-59674389
            785-955             JAXUCZ010000003.1  59676761-59676931
            956-1073            JAXUCZ010000003.1  59698803-59698920
            1074-1254           JAXUCZ010000003.1  59740716-59740896
            1255-1394           JAXUCZ010000003.1  59908742-59908881
            1395-1493           JAXUCZ010000003.1  59919399-59919497
            1494-1628           JAXUCZ010000003.1  59951054-59951188
            1629-2190           JAXUCZ010000003.1  59964238-59964799
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q12"
     gene            1..2190
                     /gene="Galnt13"
                     /gene_synonym="T13"
                     /note="polypeptide N-acetylgalactosaminyltransferase 13"
                     /db_xref="GeneID:311039"
                     /db_xref="RGD:735044"
     exon            1..240
                     /gene="Galnt13"
                     /gene_synonym="T13"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..1769
                     /gene="Galnt13"
                     /gene_synonym="T13"
                     /EC_number="2.4.1.41"
                     /note="galNAc-T13; pp-GaNTase 13; polypeptide GalNAc
                     transferase 13; protein-UDP
                     acetylgalactosaminyltransferase 13; UDP-GalNAc:polypeptide
                     N-acetylgalactosaminyltransferase 13;
                     UDP-N-acetyl-alpha-D-galactosamine:polypeptide
                     N-acetylgalactosaminyltransferase 13 (GalNAc-T13)"
                     /codon_start=1
                     /product="polypeptide N-acetylgalactosaminyltransferase
                     13"
                     /protein_id="NP_954537.1"
                     /db_xref="GeneID:311039"
                     /db_xref="RGD:735044"
                     /translation="MRRLVYCKVVLATSLMWVLVDVFLLLYFSECNKCDDKKERSLLP
                     ALRAVISRNQEGPGEMGKAVLIPKDDQEKMKELFKINQFNLMASDLIALNRSLPDVRL
                     EGCKTKVYPDELPNTSVVIVFHNEAWSTLLRTVYSVINRSPHYLLSEVILVDDASERD
                     FLKLTLENYVKTLEVPVKIIRMEERSGLIRARLRGAAASKGQVITFLDAHCECTLGWL
                     EPLLARIKEDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDR
                     RKGDRTLPVRTPTMAGGLFSIDRNYFEEIGTYDAGMDIWGGENLEMSFRIWQCGGSLE
                     IVTCSHVGHVFRKATPYTFPGGTGHVINKNNRRLAEVWMDEFKDFFYIISPGVVKVDY
                     GDVSVRKTLRENLKCKPFSWYLENIYPDSQIPRRYYSLGEIRNVETNQCLDNMGRKEN
                     EKVGIFNCHGMGGNQVFSYTADKEIRTDDLCLDVSRLSGPVIMLKCHHMRGNQLWEYD
                     AERLTLRHANSNQCLDEPSEEDKMVPTMQDCSGSRSQQWLLRNMTLGT"
     exon            241..409
                     /gene="Galnt13"
                     /gene_synonym="T13"
                     /inference="alignment:Splign:2.1.0"
     exon            410..576
                     /gene="Galnt13"
                     /gene_synonym="T13"
                     /inference="alignment:Splign:2.1.0"
     exon            577..784
                     /gene="Galnt13"
                     /gene_synonym="T13"
                     /inference="alignment:Splign:2.1.0"
     exon            785..955
                     /gene="Galnt13"
                     /gene_synonym="T13"
                     /inference="alignment:Splign:2.1.0"
     exon            956..1073
                     /gene="Galnt13"
                     /gene_synonym="T13"
                     /inference="alignment:Splign:2.1.0"
     exon            1074..1254
                     /gene="Galnt13"
                     /gene_synonym="T13"
                     /inference="alignment:Splign:2.1.0"
     exon            1255..1394
                     /gene="Galnt13"
                     /gene_synonym="T13"
                     /inference="alignment:Splign:2.1.0"
     exon            1395..1493
                     /gene="Galnt13"
                     /gene_synonym="T13"
                     /inference="alignment:Splign:2.1.0"
     exon            1494..1628
                     /gene="Galnt13"
                     /gene_synonym="T13"
                     /inference="alignment:Splign:2.1.0"
     exon            1629..2190
                     /gene="Galnt13"
                     /gene_synonym="T13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgggatgcat cttgcttttg tcctggagat cacctctgtg gcttggattt atctcaggac
       61 cattcgtctt cagtctgcgt gttaattaga aatcaagcat gaggagactc gtctactgca
      121 aggtggttct ggccacttcg ctgatgtggg tgcttgtcga tgtcttctta ctgctgtact
      181 tcagcgagtg taacaagtgt gatgacaaga aggagagatc cctgctacct gcgctgaggg
      241 ctgtcatttc aagaaaccaa gaaggtccag gagaaatggg aaaggctgtg ctcattccaa
      301 aagatgatca agagaaaatg aaagagttgt ttaaaatcaa tcagtttaac ctcatggcca
      361 gtgacttgat tgctcttaac cgaagtctgc cagatgtgag attagaaggc tgcaagacta
      421 aagtctaccc tgatgaactt ccaaacacaa gcgtcgtcat tgtattccat aatgaagctt
      481 ggagcactct acttagaact gtctatagtg tcataaatcg ctcaccgcac tacctgctct
      541 ctgaggtcat cttggttgat gatgccagtg aaagagattt cctcaagttg acattagaga
      601 actacgtgaa gactttagaa gtgccggtga aaattatcag gatggaagaa cgctccgggt
      661 taatacgcgc tcgtctccga ggagcagctg cttcaaaagg acaggtcata acttttctgg
      721 atgcacactg tgagtgcacc ttaggatggc tggagccctt gctggcgaga ataaaggaag
      781 acaggaaaac agttgtgtgc ccaatcattg atgttattag cgatgatacc tttgagtaca
      841 tggctggttc agacatgact tatggtggtt ttaactggaa gctaaatttc cgatggtatc
      901 ctgtccctca aagagaaatg gataggagaa aaggagacag gaccttacct gtcaggaccc
      961 ctactatggc tggtggccta ttttctattg acagaaacta ctttgaagag ataggaactt
     1021 acgatgcagg aatggatatc tggggtggag agaatcttga aatgtctttt aggatctggc
     1081 aatgtggagg ctctttggag attgtgactt gctctcatgt cggtcatgtt tttcgaaagg
     1141 caactccata cacctttcct ggtggcactg gccatgtcat taacaagaac aacagaagac
     1201 tagcagaagt ttggatggat gaattcaaag atttcttcta tatcatatcc ccaggtgttg
     1261 tcaaagtgga ttatggagat gtgtcagtga gaaaaacact aagggaaaat ctgaagtgta
     1321 agcctttttc ttggtaccta gaaaacatct atccggactc ccagatccca agacgttatt
     1381 actcacttgg tgagatacga aatgttgaaa ccaatcaatg cctagacaac atgggccgca
     1441 aagaaaatga aaaagtgggt atcttcaact gccatggcat gggaggtaac caggtgtttt
     1501 cttacactgc tgacaaagaa atccgaactg atgacttgtg cctggatgta tccagactca
     1561 gtgggcctgt aatcatgtta aaatgccacc acatgagagg gaatcagctg tgggagtatg
     1621 atgctgagag actcactttg agacatgcta acagtaacca atgtcttgat gaaccttctg
     1681 aagaagacaa aatggtgcct accatgcaag actgcagtgg cagcagatct caacaatggc
     1741 tgctgaggaa catgaccttg gggacatgaa gatctttttt cccaagatgt gaaagtctct
     1801 actcatttgt ttgtccatta tttcagtttg gtgaaaatct taactttgct gaattaaacg
     1861 ttttaaaaat acttttagta atataaaaca cagttgttta taattcattt ttaggaatgt
     1921 ttatttccct actaaaaatt tgtatctgat tgaagaagca cataaaatat aaataataag
     1981 aaactgttat taaacatttc aattgtttgg gaaaaaaaac accttgtatt tacttttaaa
     2041 atgtcttcat tagcctcttg tcacaaggtt acttggtatt gatttatttg gtgttctaat
     2101 aacaattaaa agagagatca tgtaatgcct tatacaatat aataattatg aaatattaat
     2161 gtagctttat aaaacactct ttttacaaaa
//
