LOCUS       XM_232988               2269 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus polypeptide
            N-acetylgalactosaminyltransferase 12 (Galnt12), transcript variant
            X1, mRNA.
ACCESSION   XM_232988
VERSION     XM_232988.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 9, 2024 this sequence was replaced by
            NM_001426999.1.
            
            On Jan 21, 2021 this sequence version replaced XM_232988.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2269
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2269
                     /gene="Galnt12"
                     /note="polypeptide N-acetylgalactosaminyltransferase 12;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 4 ESTs, 9 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 58 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:313233"
                     /db_xref="RGD:1562001"
     CDS             51..1781
                     /gene="Galnt12"
                     /codon_start=1
                     /product="polypeptide N-acetylgalactosaminyltransferase 12
                     isoform X1"
                     /protein_id="XP_232988.6"
                     /db_xref="GeneID:313233"
                     /db_xref="RGD:1562001"
                     /translation="MWGRAVRRRCPRGLRRGREALLALLALAGLGAVLRARSRSGTVD
                     PVPTRTPHPGRHEPVLPRPPLPADALGAKGEAVRLQLQGEELRLQEESVQRHQINIYL
                     SDRISLHRRLPERWNPLCREVKYDYDNLPKTSVVIAFYNEAWSTLLRTVYSVLETSPD
                     ILLEEVILVDDYSDREHLKEPLANELSQLPKVRLIRASKREGLVRARLLGASAARGEV
                     LTFLDCHCECHEGWLEPLLQRIHEKESAVVCPVIDVIDWNTFEYLGNSGEPQIGGFDW
                     RLVFTWHVVPQRERKLMRSPIDVIRSPTMAGGLFAVSKRYFEYLGSYDTGMEVWGGEN
                     LEFSFRIWQCGGTLETHPCSHVGHVFPKQAPYSRSKALANSVRAAEVWMDDFKELYYH
                     RNPQARLEPFGDVTERKKLRAKLQCKDFKWFLDTVYPELHVPEDRPGFFGMLENRGLR
                     GYCLDYNPPSENNVEGHQVLLYLCHGMGQNQFFEYTSRQEIRYNTRQPEACIAVEEGK
                     DVLIMDLCKDTVPENQEFVLQEDGTLVHKQSGKCVEATEKEFDTSFAPHLRDCSSSDN
                     QRWLFKERMS"
ORIGIN      
        1 gatccgggtc cagcctcggc ccgaggccgc ggggcgcagc tagagggtgc atgtgggggc
       61 gtgcggtgag gaggcgctgc ccgcgggggc tgcggcgcgg ccgggaggcg ttgctggcac
      121 tgctggccct ggctgggctg ggcgccgtgc tgcgggctcg aagtaggtcg gggacggtgg
      181 acccggtacc cactcggact cctcaccccg ggcgtcacga gccggtgctg cccaggcctc
      241 cgctgcccgc cgatgctctg ggagcgaagg gggaggccgt gcggctgcag ctgcagggcg
      301 aggagctgcg gctgcaggag gagagtgtgc agcggcacca gatcaacatc tatctgagcg
      361 accgaatctc gctgcaccgc cgcctgcccg agcgctggaa ccctctgtgc agagaggtga
      421 aatatgatta tgataacctg cccaagacat ctgttgtcat agcattttat aatgaagcct
      481 ggtccacact ccttcggaca gtttacagtg ttctcgagac ttcccctgac atcctgctgg
      541 aggaggtcat tctggtagat gactacagtg acagagagca cctgaaggag cccctggcca
      601 acgagctgtc acagctgccc aaggtgcgcc tgatccgtgc tagcaagaga gagggcctgg
      661 tgcgagcccg gctcctggga gcctccgcgg ccaggggcga agtgctgaca tttctggact
      721 gtcactgtga atgtcatgag gggtggctgg agcctctgct gcagaggatc catgagaagg
      781 agtcggctgt ggtgtgcccc gttatcgatg tcattgactg gaacaccttt gagtacctgg
      841 gcaactccgg agagccccag attggaggct ttgactggcg gctggtattc acgtggcatg
      901 tggtccccca gcgagagcgg aagttgatgc ggtctcctat tgacgttatc aggtctccaa
      961 ctatggctgg gggactgttt gctgtgagta agagatattt tgaatatctg gggtcttatg
     1021 atacaggaat ggaagtctgg ggaggagaaa accttgaatt ctcctttagg atctggcagt
     1081 gcggtggcac tctggaaaca cacccttgct cccacgtggg ccacgtcttc cctaagcaag
     1141 ctccctattc tcgcagcaag gctctagcca acagtgtccg cgctgcagaa gtgtggatgg
     1201 atgactttaa agaactctac taccacagaa atccccaggc ccgcctggaa ccctttgggg
     1261 acgtgacaga gagaaagaag cttcgggcca agctccagtg taaagacttc aagtggttcc
     1321 tggatacagt gtacccagaa ctgcatgtgc cagaggacag gcctggtttc ttcgggatgc
     1381 tcgagaacag aggactaagg gggtactgcc tggattataa ccctcccagt gaaaacaatg
     1441 tggaaggcca ccaggtcctt ttgtacctct gccacgggat gggtcagaac cagtttttcg
     1501 agtatacatc ccggcaagaa atacgatata acacccgcca gcccgaggcc tgcatagcag
     1561 tggaggaagg gaaggacgtc cttatcatgg atctctgcaa agataccgtt ccggagaatc
     1621 aggagttcgt cctacaggag gacggcacgt tagtccacaa gcagagcggg aaatgtgtgg
     1681 aggccacgga gaaggagttc gacacttcct ttgctccgca cttgcgggat tgtagcagct
     1741 cagacaacca gaggtggctc ttcaaggagc gcatgtcata gcacaccgcc tcgccaggga
     1801 aggagcccac cgctgccatg ggctgtgtgc ccggtgagat ggacaaagca catggttgtc
     1861 atctgtgaat gtgttggact ccacagcaat gtgaatcatc tttgtacaga tttggaaaac
     1921 tttaaaaatg tctcccagtg tcccgttttc taagggcaat cctaagatgt tgcctttggt
     1981 gtttgggaaa cttaatgcac gatgtgcatt ttacccatgg tgccttttat tcttattcgc
     2041 agaaagggta aatattttat tttgttactt acaaagcttc ccgggtgttt agtataattt
     2101 acacaaactg gtaatacctc aaatgtcgac tggtaatacc tcaatgtcat caagttagag
     2161 ttctctcagg ggggtgagac ggacactaga aatcctgtct tgatttcatt tggtgtgagt
     2221 gggtgggata gtctagattt atacaataaa gaatgctttt tgcttatgt
//
