LOCUS       XM_039104562            1253 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus galactokinase 2 (Galk2), transcript
            variant X14, mRNA.
ACCESSION   XM_039104562
VERSION     XM_039104562.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104562.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1253
                     /gene="Galk2"
                     /note="galactokinase 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 23 ESTs, 7 long SRA
                     reads, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:296117"
                     /db_xref="RGD:1308691"
     CDS             120..932
                     /gene="Galk2"
                     /codon_start=1
                     /product="N-acetylgalactosamine kinase isoform X8"
                     /protein_id="XP_038960490.1"
                     /db_xref="GeneID:296117"
                     /db_xref="RGD:1308691"
                     /translation="MDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEM
                     NKAATSHFNVRVMECRLAAKVLAKHKGLQWDKVLRLEEVQSELGISLEEMLLVTEDAL
                     HAEPYSREEICKCLGISLEELRTQILSPNTQGELTFKLYQRAKHVYSEAARVLQFKQV
                     CEAAPDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDICRKFGAKGSRLTGAGWGG
                     CTVSLVPADTLSSFLASVHEAYYQGNMSRLAREKHSLFATKPGGGALVFLEA"
ORIGIN      
        1 aaaaccagat tatgaggtgg aaagcagagg tgagaaagat taatgaatgc ggcatttgag
       61 tggaacttgc agaaatctgt gccaagagtg agcgttacat aggcaccgaa ggcggaggca
      121 tggaccagtc catatcattt cttgcagaag aaggaactgc caagttaata gaatttagtc
      181 ctctgagagc gactgatgtg aagctcccca gtggagcagt cttcgtgatt gccaacagct
      241 gtgtggaaat gaacaaggca gccacttcac atttcaacgt cagggtgatg gagtgtcggc
      301 tggcggcaaa ggtccttgct aaacacaaag gcttgcaatg ggataaagtc ctgaggctag
      361 aggaagtaca aagcgaacta ggaattagtc tggaagagat gctattggtc acagaggatg
      421 cccttcatgc agaaccctac tcaagggagg agatctgtaa gtgcctggga attagcctgg
      481 aggaactccg cacccaaatc ctgagtccaa atactcaagg cgaactcacc ttcaagctct
      541 accagcgggc caagcatgtg tacagtgagg ctgcacgtgt gctgcagttc aagcaggtgt
      601 gcgaagcagc accagacaac gccgtccagc tgctgggcga gctgatgaac cagagccaca
      661 gaagctgccg ggacatgtat gagtgcagct gcccggaatt ggatcagcta gtggacatct
      721 gccggaagtt tggggccaaa ggctcacgac ttactggagc cggatgggga ggctgcactg
      781 tgtccctcgt gcctgctgac acgctgtcca gcttcctcgc aagcgtgcat gaggcttact
      841 accaggggaa catgtcccgc ctggctcggg agaagcatag cttgtttgct accaagcctg
      901 gaggtggggc cttggttttc cttgaggcct aaacaatgtc aaacatctca gagaaactat
      961 ttcaggcatt ctggagctgg caggacttcc tgtgccacag taaatcagcc ccctttctat
     1021 tttgtgttgt gaagtatgat tgctattatc aaggtgcatt tccaaagaaa tggaaaacga
     1081 ggcttcgtga tgacttcttt tccttcttcc atgtattttt atgaatcaga gccaaggata
     1141 tgcttacatc tttgaagtat gattaagatt tattgatgtg aagattttaa agatgaacag
     1201 caaaatgtac ttttagttgt acactctcct ccaattaaat tgatagagct gaa
//
