LOCUS       XM_039104561            1214 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus galactokinase 2 (Galk2), transcript
            variant X13, mRNA.
ACCESSION   XM_039104561
VERSION     XM_039104561.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104561.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1214
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1214
                     /gene="Galk2"
                     /note="galactokinase 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 23 ESTs, 7 long SRA
                     reads, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 30 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:296117"
                     /db_xref="RGD:1308691"
     CDS             81..893
                     /gene="Galk2"
                     /codon_start=1
                     /product="N-acetylgalactosamine kinase isoform X8"
                     /protein_id="XP_038960489.1"
                     /db_xref="GeneID:296117"
                     /db_xref="RGD:1308691"
                     /translation="MDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEM
                     NKAATSHFNVRVMECRLAAKVLAKHKGLQWDKVLRLEEVQSELGISLEEMLLVTEDAL
                     HAEPYSREEICKCLGISLEELRTQILSPNTQGELTFKLYQRAKHVYSEAARVLQFKQV
                     CEAAPDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDICRKFGAKGSRLTGAGWGG
                     CTVSLVPADTLSSFLASVHEAYYQGNMSRLAREKHSLFATKPGGGALVFLEA"
ORIGIN      
        1 agtctgcttg agaggcacaa gtggaacttg cagaaatctg tgccaagagt gagcgttaca
       61 taggcaccga aggcggaggc atggaccagt ccatatcatt tcttgcagaa gaaggaactg
      121 ccaagttaat agaatttagt cctctgagag cgactgatgt gaagctcccc agtggagcag
      181 tcttcgtgat tgccaacagc tgtgtggaaa tgaacaaggc agccacttca catttcaacg
      241 tcagggtgat ggagtgtcgg ctggcggcaa aggtccttgc taaacacaaa ggcttgcaat
      301 gggataaagt cctgaggcta gaggaagtac aaagcgaact aggaattagt ctggaagaga
      361 tgctattggt cacagaggat gcccttcatg cagaacccta ctcaagggag gagatctgta
      421 agtgcctggg aattagcctg gaggaactcc gcacccaaat cctgagtcca aatactcaag
      481 gcgaactcac cttcaagctc taccagcggg ccaagcatgt gtacagtgag gctgcacgtg
      541 tgctgcagtt caagcaggtg tgcgaagcag caccagacaa cgccgtccag ctgctgggcg
      601 agctgatgaa ccagagccac agaagctgcc gggacatgta tgagtgcagc tgcccggaat
      661 tggatcagct agtggacatc tgccggaagt ttggggccaa aggctcacga cttactggag
      721 ccggatgggg aggctgcact gtgtccctcg tgcctgctga cacgctgtcc agcttcctcg
      781 caagcgtgca tgaggcttac taccagggga acatgtcccg cctggctcgg gagaagcata
      841 gcttgtttgc taccaagcct ggaggtgggg ccttggtttt ccttgaggcc taaacaatgt
      901 caaacatctc agagaaacta tttcaggcat tctggagctg gcaggacttc ctgtgccaca
      961 gtaaatcagc cccctttcta ttttgtgttg tgaagtatga ttgctattat caaggtgcat
     1021 ttccaaagaa atggaaaacg aggcttcgtg atgacttctt ttccttcttc catgtatttt
     1081 tatgaatcag agccaaggat atgcttacat ctttgaagta tgattaagat ttattgatgt
     1141 gaagatttta aagatgaaca gcaaaatgta cttttagttg tacactctcc tccaattaaa
     1201 ttgatagagc tgaa
//
