LOCUS       XM_039104559            1638 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus galactokinase 2 (Galk2), transcript
            variant X8, mRNA.
ACCESSION   XM_039104559
VERSION     XM_039104559.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1638
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1638
                     /gene="Galk2"
                     /note="galactokinase 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 25 ESTs, 7 long SRA
                     reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 42 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:296117"
                     /db_xref="RGD:1308691"
     CDS             187..1317
                     /gene="Galk2"
                     /codon_start=1
                     /product="N-acetylgalactosamine kinase isoform X7"
                     /protein_id="XP_038960487.1"
                     /db_xref="GeneID:296117"
                     /db_xref="RGD:1308691"
                     /translation="MPDLYDRDFSTTANNICIDKTQPLWHNYFLCGFKGIQEHFGLTQ
                     LPGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGMRLSKVELAEICAKSERYIGT
                     EGGGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNV
                     RVMECRLAAKVLAKHKGLQWDKVLRLEEVQSELGISLEEMLLVTEDALHAEPYSREEI
                     CKCLGISLEELRTQILSPNTQGELTFKLYQRAKHVYSEAARVLQFKQVCEAAPDNAVQ
                     LLGELMNQSHRSCRDMYECSCPELDQLVDICRKFGAKGSRLTGAGWGGCTVSLVPADT
                     LSSFLASVHEAYYQGNMSRLAREKHSLFATKPGGGALVFLEA"
ORIGIN      
        1 cagtcggctc ttcctgcgcg acagttggtg tcttagcaac taagcgtagc aactgggaaa
       61 tcgggcgctg cgggtccttc ctatctgagg ggcttcggaa accttctagc agtatccagc
      121 gtcctaggtg agggaactgt ctccttcctt gcctgggact ctggaaccgt ctctttctaa
      181 tgaaacatgc ccgacctata tgacagagac ttcagtacta cagctaataa catctgtatc
      241 gacaagaccc aacctctatg gcacaactac ttcctatgtg gatttaaggg aattcaggaa
      301 cactttggtc ttactcagct gcctggaatg aattgcctgg tggatggaaa tatacccccg
      361 agttcaggcc tctccagctc cagtgctctg gtttgctgcg ctgggttagt gactctcaca
      421 gtgctgggaa tgagactatc caaggtggaa cttgcagaaa tctgtgccaa gagtgagcgt
      481 tacataggca ccgaaggcgg aggcatggac cagtccatat catttcttgc agaagaagga
      541 actgccaagt taatagaatt tagtcctctg agagcgactg atgtgaagct ccccagtgga
      601 gcagtcttcg tgattgccaa cagctgtgtg gaaatgaaca aggcagccac ttcacatttc
      661 aacgtcaggg tgatggagtg tcggctggcg gcaaaggtcc ttgctaaaca caaaggcttg
      721 caatgggata aagtcctgag gctagaggaa gtacaaagcg aactaggaat tagtctggaa
      781 gagatgctat tggtcacaga ggatgccctt catgcagaac cctactcaag ggaggagatc
      841 tgtaagtgcc tgggaattag cctggaggaa ctccgcaccc aaatcctgag tccaaatact
      901 caaggcgaac tcaccttcaa gctctaccag cgggccaagc atgtgtacag tgaggctgca
      961 cgtgtgctgc agttcaagca ggtgtgcgaa gcagcaccag acaacgccgt ccagctgctg
     1021 ggcgagctga tgaaccagag ccacagaagc tgccgggaca tgtatgagtg cagctgcccg
     1081 gaattggatc agctagtgga catctgccgg aagtttgggg ccaaaggctc acgacttact
     1141 ggagccggat ggggaggctg cactgtgtcc ctcgtgcctg ctgacacgct gtccagcttc
     1201 ctcgcaagcg tgcatgaggc ttactaccag gggaacatgt cccgcctggc tcgggagaag
     1261 catagcttgt ttgctaccaa gcctggaggt ggggccttgg ttttccttga ggcctaaaca
     1321 atgtcaaaca tctcagagaa actatttcag gcattctgga gctggcagga cttcctgtgc
     1381 cacagtaaat cagccccctt tctattttgt gttgtgaagt atgattgcta ttatcaaggt
     1441 gcatttccaa agaaatggaa aacgaggctt cgtgatgact tcttttcctt cttccatgta
     1501 tttttatgaa tcagagccaa ggatatgctt acatctttga agtatgatta agatttattg
     1561 atgtgaagat tttaaagatg aacagcaaaa tgtactttta gttgtacact ctcctccaat
     1621 taaattgata gagctgaa
//
