LOCUS       XM_039104557            1851 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus galactokinase 2 (Galk2), transcript
            variant X2, mRNA.
ACCESSION   XM_039104557
VERSION     XM_039104557.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104557.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1851
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1851
                     /gene="Galk2"
                     /note="galactokinase 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 27 ESTs, 10 long SRA
                     reads, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 186
                     samples with support for all annotated introns"
                     /db_xref="GeneID:296117"
                     /db_xref="RGD:1308691"
     CDS             187..1530
                     /gene="Galk2"
                     /codon_start=1
                     /product="N-acetylgalactosamine kinase isoform X2"
                     /protein_id="XP_038960485.1"
                     /db_xref="GeneID:296117"
                     /db_xref="RGD:1308691"
                     /translation="MPDLYDRLLKLKEMFNSKFGSTPKFYVRAPGRVNIIGEHIDYCG
                     YSVLPMAVEQDMLIAVGPVKTQTLQLANTDPLYPDFSTTANNICIDKTQPLWHNYFLC
                     GFKGIQEHFGLTQLPGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGMRLSKVEL
                     AEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSC
                     VEMNKAATSHFNVRVMECRLAAKVLAKHKGLQWDKVLRLEEVQSELGISLEEMLLVTE
                     DALHAEPYSREEICKCLGISLEELRTQILSPNTQGELTFKLYQRAKHVYSEAARVLQF
                     KQVCEAAPDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDICRKFGAKGSRLTGAG
                     WGGCTVSLVPADTLSSFLASVHEAYYQGNMSRLAREKHSLFATKPGGGALVFLEA"
ORIGIN      
        1 cagtcggctc ttcctgcgcg acagttggtg tcttagcaac taagcgtagc aactgggaaa
       61 tcgggcgctg cgggtccttc ctatctgagg ggcttcggaa accttctagc agtatccagc
      121 gtcctaggtg agggaactgt ctccttcctt gcctgggact ctggaaccgt ctctttctaa
      181 tgaaacatgc ccgacctata tgacagattg ctgaagctaa aagagatgtt caactctaag
      241 tttgggtcca cacccaagtt ttatgttcga gccccaggaa gagtgaacat aataggtgag
      301 cacatagatt actgtgggta ctctgttctc cccatggctg tggagcagga catgctaata
      361 gctgtgggac ctgtgaaaac ccagactctc caactggcca atacagaccc cttgtatcca
      421 gacttcagta ctacagctaa taacatctgt atcgacaaga cccaacctct atggcacaac
      481 tacttcctat gtggatttaa gggaattcag gaacactttg gtcttactca gctgcctgga
      541 atgaattgcc tggtggatgg aaatataccc ccgagttcag gcctctccag ctccagtgct
      601 ctggtttgct gcgctgggtt agtgactctc acagtgctgg gaatgagact atccaaggtg
      661 gaacttgcag aaatctgtgc caagagtgag cgttacatag gcaccgaagg cggaggcatg
      721 gaccagtcca tatcatttct tgcagaagaa ggaactgcca agttaataga atttagtcct
      781 ctgagagcga ctgatgtgaa gctccccagt ggagcagtct tcgtgattgc caacagctgt
      841 gtggaaatga acaaggcagc cacttcacat ttcaacgtca gggtgatgga gtgtcggctg
      901 gcggcaaagg tccttgctaa acacaaaggc ttgcaatggg ataaagtcct gaggctagag
      961 gaagtacaaa gcgaactagg aattagtctg gaagagatgc tattggtcac agaggatgcc
     1021 cttcatgcag aaccctactc aagggaggag atctgtaagt gcctgggaat tagcctggag
     1081 gaactccgca cccaaatcct gagtccaaat actcaaggcg aactcacctt caagctctac
     1141 cagcgggcca agcatgtgta cagtgaggct gcacgtgtgc tgcagttcaa gcaggtgtgc
     1201 gaagcagcac cagacaacgc cgtccagctg ctgggcgagc tgatgaacca gagccacaga
     1261 agctgccggg acatgtatga gtgcagctgc ccggaattgg atcagctagt ggacatctgc
     1321 cggaagtttg gggccaaagg ctcacgactt actggagccg gatggggagg ctgcactgtg
     1381 tccctcgtgc ctgctgacac gctgtccagc ttcctcgcaa gcgtgcatga ggcttactac
     1441 caggggaaca tgtcccgcct ggctcgggag aagcatagct tgtttgctac caagcctgga
     1501 ggtggggcct tggttttcct tgaggcctaa acaatgtcaa acatctcaga gaaactattt
     1561 caggcattct ggagctggca ggacttcctg tgccacagta aatcagcccc ctttctattt
     1621 tgtgttgtga agtatgattg ctattatcaa ggtgcatttc caaagaaatg gaaaacgagg
     1681 cttcgtgatg acttcttttc cttcttccat gtatttttat gaatcagagc caaggatatg
     1741 cttacatctt tgaagtatga ttaagattta ttgatgtgaa gattttaaag atgaacagca
     1801 aaatgtactt ttagttgtac actctcctcc aattaaattg atagagctga a
//
