LOCUS       XM_039112334            3419 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus galactosylceramidase (Galc),
            transcript variant X6, mRNA.
ACCESSION   XM_039112334
VERSION     XM_039112334.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3419
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3419
                     /gene="Galc"
                     /note="galactosylceramidase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 17
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 56 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:314360"
                     /db_xref="RGD:1359384"
     CDS             108..1814
                     /gene="Galc"
                     /codon_start=1
                     /product="galactocerebrosidase isoform X2"
                     /protein_id="XP_038968262.1"
                     /db_xref="GeneID:314360"
                     /db_xref="RGD:1359384"
                     /translation="MHYELDENYFRGYEWWLMKEAKKRNPNIILMGLPWSFPGWLGKG
                     FSWPYVNLQLTAFYIVRWILGAKHYHDLDIDYIGIWNERPFDANYIKELRKMLDYEGL
                     QRVRIIASDNLWEPISSSVLLDQELWKVVDVIGAHYPGTYTVWNAKMSGKKLWSSEDF
                     STVNSNVGAGCWGRILNQNYINGNMTATIAWNLVASYYEELPYGRSGLMTAQEPWSGH
                     YVVASPIWVSAHTTQFTQPGWYYLKTVGHLEKGGSYVALTDGLGNFTIIVETMSRQHS
                     MCIRPYLPYYNVSRQLATFILKGSLKEIQELQVWYTKLGTTPEKLHFKQLETLWLLDG
                     SGSFSLELEEDEMFTLTTLTTGHKGSYRPPPKSQPFPTSYKDDFNVEYPLFSEAPNFA
                     DQTGVFEYYTNNEDLEHRFTLRQVLNQRPITWAADASSTISVIGDHHWSNMTVQCDVY
                     IETPRTGGVFIAGRVNKGGILIRTASGVFFWIFANGSYRVTADLGGWITYASGHADVT
                     AKRWYTLTLGIKGYLASGMLNGKILWENVPVKYPGHGWAAIGTHTFEFAQFDNFHVEA
                     AR"
ORIGIN      
        1 tcaagttctg acgccctggc aacctcccgg cttctagtaa attacccaga gccctatcgt
       61 tctgaaatac tggattatct atttaagacg gcactgaacc ctcccacatg cactatgagc
      121 tagatgagaa ttatttccga ggctatgagt ggtggctaat gaaggaagct aagaagagga
      181 acccaaatat tatacttatg gggttgccat ggtcattccc tggatggctg ggcaaaggct
      241 tcagttggcc ttatgtaaat cttcagctga ctgccttcta tattgtgaga tggattttgg
      301 gtgccaagca ttatcatgac ctggacattg attatattgg gatatggaat gaaaggccgt
      361 ttgatgccaa ctatataaag gaattaagaa aaatgcttga ttatgaaggt ctccagcgag
      421 tgagaatcat agcaagtgat aatctctggg agccaatttc ctcttctgtg ctgcttgacc
      481 aggagctctg gaaggtggtt gatgttatag gagctcatta tcccggaacc tacacagtct
      541 ggaatgcaaa gatgtcaggg aagaagcttt ggtcgtcgga agactttagc actgtcaaca
      601 gtaatgttgg cgcaggctgt tggggtcgca tattgaacca gaattacatc aatggcaata
      661 tgaccgccac aattgcttgg aatttggtgg ctagttacta tgaagaattg ccctatggac
      721 gaagtggatt gatgacagcc caggagccgt ggagtggaca ttatgtagta gcatctccta
      781 tctgggtatc agctcataca actcaattta ctcaaccagg ctggtattac ctgaagacag
      841 ttggccatct agagaaagga ggaagctatg tagctctgac tgatggcttg gggaatttca
      901 ccatcatcgt tgaaactatg agtcgtcaac attctatgtg tatacggcca tatctaccgt
      961 attataatgt ctcacgtcag ctggccacct tcattctaaa ggggtctttg aaagaaatac
     1021 aagagctgca ggtgtggtac accaagcttg gaacaacacc agagaaactt cattttaaac
     1081 aactggaaac tctatggctc cttgacggca gcggcagttt ctcactggaa ctggaggagg
     1141 atgagatgtt cacactcacc actctgacca cagggcacaa aggcagctac cgtccccctc
     1201 ccaagtcaca gcccttccca accagctata aggatgattt caacgttgag tacccattat
     1261 ttagtgaagc tccgaatttt gctgatcaga ccggcgtgtt cgagtactac acgaataacg
     1321 aagaccttga gcatcgcttc acactgcgcc aagttctcaa ccaacgacct attacctggg
     1381 ccgcggatgc ctccagcacg atcagtgtca taggcgatca ccactggagc aacatgactg
     1441 tgcagtgtga tgtttacata gagactcctc ggactggcgg tgtgttcatt gctggaagag
     1501 tgaataaagg tggtatcttg atcagaactg cttcaggagt tttcttctgg atttttgcaa
     1561 atggctctta cagagttaca gccgacctgg gtgggtggat aacatatgct tcaggacatg
     1621 ctgacgttac agcaaagcga tggtatacac tcaccttagg cattaagggt tatctcgcct
     1681 ctggtatgtt gaacggcaag atcctgtggg aaaatgtgcc cgtgaaatac ccagggcatg
     1741 gctgggctgc gatcggaacg cataccttcg agtttgcgca gtttgacaac tttcatgtgg
     1801 aagctgctcg ctaatattca caggccgtca agacatgatt tggattttct gtttttgatt
     1861 ttggttcaga gctggttctc attttgatgg atctgtatat cctttgaggc tcacaatgag
     1921 gagtaaatag gggaaatggt gcacttttgc tggatcccgt gaaagattta tttagagcta
     1981 attacacagg ggatgcagat agtctttggc actgtctgtg gcggccctta cggcccactg
     2041 ttggtcagtc ccatctttca ggagtgcttt gagtggttct ggccttgtag ccttggcact
     2101 gataccgagg tagctcaccc taagttgttt gtaaatgctc atgcagatgg ctgggaccac
     2161 aggggtgttt ttgtgagctt ggaccatgcc ttagtcgagg cttccttaga agatgctgat
     2221 gcttaagaag ataccaatga gcacttccat gaatacttga actttcagtt ctctctccct
     2281 caccccatcc ctctctcctt tcccctctct cctctatcac tgtctcctcc ctgctccagg
     2341 atgatacttt tggaattgca caaatgatga tgggatgatt tgaaaagtaa taaactaata
     2401 ccaaagccat ttttgcacta ataaaacaca accagattaa ttgggttgtt tgtactttaa
     2461 aactctctta cttccaactt ttaaccctct tgagaacatt tcccatgttg caggaagtct
     2521 agcagcttcc ctgtacgatt cttgtgcctt ttgcagttcg tcctcacaag gggctctgga
     2581 cacagcccag caccagcgaa tgccttcatc tatctacgcg tggcaggagg ggccaccggg
     2641 gctttaacta gctcagagtt ggatcatctc cttgagagtt tggatagatg caattgttat
     2701 atccccaatt tatatttaca tgttggcaag catgtttctc attagtatga ttatactaat
     2761 aatatccatt taacattaat gtaactctta gacaccaatg aattttccat gtgggtaaag
     2821 tgaattctgg aatttcttgt aaggaaaaat tactcactga attaactcta ctccctggga
     2881 atttgtgctg ctctaacatg ggtagataaa ctgtgaggtc tgtattactt ttgaaaactt
     2941 gaaaccaagg ttagatgatt tactatttaa atctttgagt atttttgaaa agtagcaaaa
     3001 caggtacaat ttatacattt gaatgtttcc attttaaatg tatagtttgg taaatgtaaa
     3061 cattccctgg taacccacac tccagtgaag ctattgacga tttccatccc tccagaaagt
     3121 tctgttacac tgtacaacag tcttcatcac tcctctttgc aagcagcagt gacatctctg
     3181 ttgctaaaaa taaaaatgtt tgttttgaaa gtgagaggat atgctgtgta ctcttctaag
     3241 tggatgtttc tgtcagcgca gtgctgtagg atttgtccag agtgtaaggt tttgccaatg
     3301 aggtacattc ctccttattt ttgaagggaa cattgaatgg atgtaccaca attttgcttt
     3361 cccatctctt gtttttatga gattaaaaat aaaactcatt aagggcatta acatacaaa
//
