LOCUS       XM_039100033            2263 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus gamma-aminobutyric acid type A
            receptor subunit epsilon (Gabre), transcript variant X7, mRNA.
ACCESSION   XM_039100033
VERSION     XM_039100033.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100033.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2263
                     /gene="Gabre"
                     /note="gamma-aminobutyric acid type A receptor subunit
                     epsilon; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 88% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     8 samples with support for all annotated introns"
                     /db_xref="GeneID:65191"
                     /db_xref="RGD:68320"
     CDS             115..2139
                     /gene="Gabre"
                     /codon_start=1
                     /product="gamma-aminobutyric acid receptor subunit epsilon
                     isoform X5"
                     /protein_id="XP_038955961.1"
                     /db_xref="GeneID:65191"
                     /db_xref="RGD:68320"
                     /translation="MLPKVLLMLLNMFLALQWRVGPHIKLENKPPAQDKVVFGPQPQP
                     VPQPLIPPESPAGDDVVFDSQPQPQSESPGHDDVFSSQPQPLPQPQPLPEPQPLPEPE
                     PQPQPQPQPQPQPQPLAGRQPLPQPLPWPLPQPQPEPEPQPEPQPEPQPEPQPEPQPE
                     PQPEPQPEPQPQPQPLAGRQPLPWPLPLPLPEPQPDPQPDPQPEPQPEPQPEPQPQPQ
                     TPGQVQAGRQPRPKPQPDPHPHPQPEPQPEPRLHPFHRLRLRPHPYPEPHPGPQPEPE
                     PEPEPEPQPEPQPEPQPEPQPEPEPQPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE
                     PEPEPEPEPQPEPEPEPEPEPEPEPEPEPEPEPQPEPQPEPEPEPEPQPEPQPEPEPE
                     PEPEPEPEPEPEPEPQPEPQPEPEPQPEPQPDPEPQPEPGPEPGPEPEPEPQLEPQPE
                     PEPEPQPEPESELDLEPEPEPQPLPEPQPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE
                     PEPEPELELEPQSQLEPQPSGKKLPARETELTADHTTERPRGKLTRASQILNTILSNY
                     DHKLRPSIGEKPTVVTVKVFVNSLGPISILDMEYSIDIIFYQTWYDERLRYNDTFETL
                     ILHGNVVSQLWIPDTFFRNSKRTQEYDITIPNQMALIHKDGKVLYTVSFL"
ORIGIN      
        1 cggggcgagt gggaggagtg aaagttggag cccaacaaaa ccctccacct cgctcagaac
       61 agccagacct gcgctgcgac ctccacacag gtggtcgtgc caggcaccgc tgagatgttg
      121 cctaaagttc tcctgatgct cctcaacatg ttcctggccc tccagtggag ggttggacct
      181 cacattaaac tggagaataa accccctgcc caagataagg tagtctttgg ccctcagcct
      241 cagcctgtgc cacaacctct gattccgcct gaatctcctg ctggagatga tgtagtcttc
      301 gactctcagc cccagcccca gtcggaatcc cctggccatg atgatgtctt tagctcccag
      361 ccccagcctc tgccccagcc ccagcctctg ccggagcccc agcctctgcc ggagcctgag
      421 ccacagccgc agccacagcc acagccgcag ccgcagccac agcccctggc tgggcgccag
      481 cctctgcccc agcccctgcc ttggcccctg cctcagcctc agcccgaacc ggagccccag
      541 ccggagcccc agccggagcc ccagcctgag ccccagccgg agccccagcc tgagccccaa
      601 ccagaacccc agccagaacc ccagcctcaa cctcagcctc tggctgggcg ccagcctttg
      661 ccttggcccc tgccactgcc cctgcccgag ccccaacctg atccccagcc tgatccccaa
      721 ccggagcctc agccagaacc ccaacctgag ccccagcctc agccccagac cccaggccag
      781 gtccaggctg ggcgccaacc ccgccccaaa cctcagcctg atccccatcc ccatccgcag
      841 cctgaacctc agcctgagcc acgtctccat ccctttcacc gtctccgtct ccgtccccat
      901 ccctatcctg agccccatcc aggaccccag ccggagcctg agcctgagcc tgagccggag
      961 ccccagccgg agccccagcc ggagccccag ccggagcccc aaccggagcc tgagccccag
     1021 ccggagccgg agccggagcc tgagcctgag cctgagcctg agcctgagcc cgagcccgag
     1081 cccgagcccg agcctgagcc tgagcctgag cctgagcctg agcctgagcc tgagcctgag
     1141 ccccagccgg agccggagcc ggagccggag ccggagcccg aacctgagcc cgagcccgag
     1201 cccgagcccg agcctcagcc agagccccag ccagaacctg agcctgagcc cgagccccag
     1261 cccgagcccc agcccgagcc cgagcccgag cccgagcccg agcccgagcc cgagcccgaa
     1321 cctgaacctg agcctcagcc ggagccccag cctgagcctg agccccagcc tgagccccag
     1381 ccagatcctg agcctcagcc tgagcccgga cctgaacctg gacctgaacc tgaacctgag
     1441 cctcagctgg agccccagcc agagcctgag cctgagccac agccggagcc tgagtcggag
     1501 ctggacctgg agccggaacc agagccccag cccctgccgg agccccagcc tgagcctgag
     1561 cctgagcctg agccggagcc ggagccggag ccggagccgg agccggagcc ggagccggag
     1621 ccggagccgg agcctgagcc agaaccggag ccagagctgg aactggagcc ccagtcccag
     1681 ctggagcctc agcctagtgg aaagaagctt ccagcaagag aaacagaact cactgctgat
     1741 catacaactg aacgcccacg tggaaaactg acaagagctt ctcaaatcct taacaccatc
     1801 ctgagcaact acgaccataa actgcgccct agcattggag agaagcctac cgtggtcact
     1861 gttaaagtct ttgtcaacag cctcggacct atttccatcc tagacatgga atattccatt
     1921 gacatcatct tctaccagac ctggtatgat gagcgtcttc gttacaatga cacctttgag
     1981 acacttattc tacatggcaa cgtggtgagc cagttgtgga tcccggatac tttttttagg
     2041 aattctaaga ggacccaaga gtatgatatc accataccca accagatggc tctcatccat
     2101 aaggatggaa aagtgttgta cacagttagt ttcctatgat gagcatgaga tgatatacaa
     2161 gtgggagaat ttcaaactca aaatcgatgc gaagaacact tggaagctat tggagtttga
     2221 ttttacagga gtgaacaaca aaactgaaat catctccacc cca
//
