LOCUS       XM_039100029            4381 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus gamma-aminobutyric acid type A
            receptor subunit epsilon (Gabre), transcript variant X2, mRNA.
ACCESSION   XM_039100029
VERSION     XM_039100029.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4381
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4381
                     /gene="Gabre"
                     /note="gamma-aminobutyric acid type A receptor subunit
                     epsilon; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, 2 Proteins, and 93%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:65191"
                     /db_xref="RGD:68320"
     CDS             115..2910
                     /gene="Gabre"
                     /codon_start=1
                     /product="gamma-aminobutyric acid receptor subunit epsilon
                     isoform X2"
                     /protein_id="XP_038955957.1"
                     /db_xref="GeneID:65191"
                     /db_xref="RGD:68320"
                     /translation="MLPKVLLMLLNMFLALQWRVGPHIKLENKPPAQDKVVFGPQPQP
                     VPQPLIPPESPAGDDVVFDSQPQPQSESPGHDDVFSSQPQPLPQPQPLPEPQPLPEPE
                     PQPQPQPQPQPQPQPLAGRQPLPQPLPWPLPQPQPEPEPQPEPQPEPQPEPQPEPQPE
                     PQPEPQPEPQPQPQPLAGRQPLPWPLPLPLPEPQPDPQPDPQPEPQPEPQPEPQPQPQ
                     TPGQVQAGRQPRPKPQPDPHPHPQPEPQPEPRLHPFHRLRLRPHPYPEPHPGPQPEPE
                     PEPEPEPQPEPQPEPQPEPQPEPEPQPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE
                     PEPEPEPEPQPEPEPEPEPEPEPEPEPEPEPEPQPEPQPEPEPEPEPQPEPQPEPEPE
                     PEPEPEPEPEPEPEPQPEPQPEPEPQPEPQPDPEPQPEPGPEPGPEPEPEPQLEPQPE
                     PEPEPQPEPESELDLEPEPEPQPLPEPQPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE
                     PEPEPELELEPQSQLEPQPSGKKLPARETELTADHTTERPRGKLTRASQILNTILSNY
                     DHKLRPSIGEKPTVVTVKVFVNSLGPISILDMEYSIDIIFYQTWNSKRTQEYDITIPN
                     QMALIHKDGKVLYTVRMTIDARCSLHMLNFPMDSHSCPLSFSSFSYDEHEMIYKWENF
                     KLKIDAKNTWKLLEFDFTGVNNKTEIISTPVGDFMVMTFFFNVSRRFGFIVFQNYIPS
                     SVTTMLSWVSFWIKIEAAAARASVALDFYIAICFVLCFCTLLEFTVLNFLTYNNIERQ
                     ASPKFYQFPTNSRANARTRARARTRARARARARQQQEVFVCEIVTYEENAEEGYQWSP
                     RSRRPQCPWRRCGRSYVCFRVLRKYFCMVPGCEGNSWQRGRICIHVYRLDNYSRVLFP
                     ITFFFFNVVYWVICLNL"
ORIGIN      
        1 cggggcgagt gggaggagtg aaagttggag cccaacaaaa ccctccacct cgctcagaac
       61 agccagacct gcgctgcgac ctccacacag gtggtcgtgc caggcaccgc tgagatgttg
      121 cctaaagttc tcctgatgct cctcaacatg ttcctggccc tccagtggag ggttggacct
      181 cacattaaac tggagaataa accccctgcc caagataagg tagtctttgg ccctcagcct
      241 cagcctgtgc cacaacctct gattccgcct gaatctcctg ctggagatga tgtagtcttc
      301 gactctcagc cccagcccca gtcggaatcc cctggccatg atgatgtctt tagctcccag
      361 ccccagcctc tgccccagcc ccagcctctg ccggagcccc agcctctgcc ggagcctgag
      421 ccacagccgc agccacagcc acagccgcag ccgcagccac agcccctggc tgggcgccag
      481 cctctgcccc agcccctgcc ttggcccctg cctcagcctc agcccgaacc ggagccccag
      541 ccggagcccc agccggagcc ccagcctgag ccccagccgg agccccagcc tgagccccaa
      601 ccagaacccc agccagaacc ccagcctcaa cctcagcctc tggctgggcg ccagcctttg
      661 ccttggcccc tgccactgcc cctgcccgag ccccaacctg atccccagcc tgatccccaa
      721 ccggagcctc agccagaacc ccaacctgag ccccagcctc agccccagac cccaggccag
      781 gtccaggctg ggcgccaacc ccgccccaaa cctcagcctg atccccatcc ccatccgcag
      841 cctgaacctc agcctgagcc acgtctccat ccctttcacc gtctccgtct ccgtccccat
      901 ccctatcctg agccccatcc aggaccccag ccggagcctg agcctgagcc tgagccggag
      961 ccccagccgg agccccagcc ggagccccag ccggagcccc aaccggagcc tgagccccag
     1021 ccggagccgg agccggagcc tgagcctgag cctgagcctg agcctgagcc cgagcccgag
     1081 cccgagcccg agcctgagcc tgagcctgag cctgagcctg agcctgagcc tgagcctgag
     1141 ccccagccgg agccggagcc ggagccggag ccggagcccg aacctgagcc cgagcccgag
     1201 cccgagcccg agcctcagcc agagccccag ccagaacctg agcctgagcc cgagccccag
     1261 cccgagcccc agcccgagcc cgagcccgag cccgagcccg agcccgagcc cgagcccgaa
     1321 cctgaacctg agcctcagcc ggagccccag cctgagcctg agccccagcc tgagccccag
     1381 ccagatcctg agcctcagcc tgagcccgga cctgaacctg gacctgaacc tgaacctgag
     1441 cctcagctgg agccccagcc agagcctgag cctgagccac agccggagcc tgagtcggag
     1501 ctggacctgg agccggaacc agagccccag cccctgccgg agccccagcc tgagcctgag
     1561 cctgagcctg agccggagcc ggagccggag ccggagccgg agccggagcc ggagccggag
     1621 ccggagccgg agcctgagcc agaaccggag ccagagctgg aactggagcc ccagtcccag
     1681 ctggagcctc agcctagtgg aaagaagctt ccagcaagag aaacagaact cactgctgat
     1741 catacaactg aacgcccacg tggaaaactg acaagagctt ctcaaatcct taacaccatc
     1801 ctgagcaact acgaccataa actgcgccct agcattggag agaagcctac cgtggtcact
     1861 gttaaagtct ttgtcaacag cctcggacct atttccatcc tagacatgga atattccatt
     1921 gacatcatct tctaccagac ctggaattct aagaggaccc aagagtatga tatcaccata
     1981 cccaaccaga tggctctcat ccataaggat ggaaaagtgt tgtacacagt taggatgacc
     2041 attgatgcaa gatgctcact ccacatgctc aattttccaa tggattctca ctcttgccct
     2101 ctgtctttct ctagcttttc ctatgatgag catgagatga tatacaagtg ggagaatttc
     2161 aaactcaaaa tcgatgcgaa gaacacttgg aagctattgg agtttgattt tacaggagtg
     2221 aacaacaaaa ctgaaatcat ctccacccca gttggtgact tcatggtcat gacattcttc
     2281 ttcaatgtaa gcaggaggtt tggcttcatt gtctttcaaa actatatccc ttcatctgtt
     2341 accacaatgc tttcctgggt gtccttctgg atcaagatag aagctgctgc tgccagggcc
     2401 tctgtagctt tggacttcta tattgcaatt tgtttcgtct tgtgcttctg tactctacta
     2461 gagttcactg tgctcaactt cctgacctac aataatattg aacgacaggc ttctccaaag
     2521 ttctaccaat ttccaaccaa tagccgtgct aatgcacgta ctcgtgctcg tgcccgcact
     2581 cgtgctcgtg ctcgtgcccg tgctcgtcag cagcaggaag tgtttgtgtg tgagattgtt
     2641 acctatgagg aaaatgctga agagggttac cagtggtctc caagatcaag aagacctcag
     2701 tgtccctgga ggcgatgtgg ccgaagctat gtgtgcttca gggttctcag gaagtatttc
     2761 tgcatggttc ctggttgtga gggcaacagc tggcagcggg gccgcatctg catccacgtt
     2821 tatcgcctgg ataactactc gcgggtgctt ttccccatta cattcttctt ctttaatgtg
     2881 gtctactggg tgatttgcct taacctgtag gctccagctg gtagctcatg gggcaatcac
     2941 ctcagttccc caggaggtcc taagcccctt tgtcaaggga gttgggagac aatagcaaca
     3001 gcagcaagcc tgaggagagt ttgtctttgc tgctcctcct tttgttggcc ccttcactca
     3061 atcttttaaa cagcacttct caagtaacag cccacctctc tattcttcaa agagtatcca
     3121 tgatgttcag tgtgcccaca attgagcaga taagctatct cttggttgtg tttgcagtta
     3181 ctgtttttcc ccaggaggtc atggtaccat ttgtggtgct aaggggccca gctcaagctc
     3241 agccctagaa tgcacagagc aacaacagta tagcagaagg aaggtcctca tccttaagtc
     3301 tttaagtcag gctatttgat tttttctccc tgctctctct tcctctacac acacacacac
     3361 acacacacac acacacacac actcacacac acacacacac acgcacgcac gcacgcacgc
     3421 acaccactat ctgtaggagg agaggagcca gcaagtgggc ctgtttggga aagtaaccgt
     3481 ctctgctgcc atgtcatctc cttctccccc cccccccccc cgcctccatc tgcactccca
     3541 attcagttcc cttcatctaa tgggtatcta ttcttgtgtg caatgtttgt aatttcccct
     3601 gctttgtatg cctccttctt cctcttcctt gatccctgtg attctttctg taacttcccc
     3661 agtgactttc ccagccctga tccaggtgct aggctttgtg tctcccaggg accaagaaac
     3721 caagagcact ctgttgagca gctgccattg cctatcactg attggtgctc acctcaggca
     3781 cagtctaatg gtttgattgc ttccttggtc cctggaccca taagccagtc cactgccatc
     3841 cctggggcac tcacacaatt gcaatcaatt gaactccctt aaatttgtat aacattttcc
     3901 ctttgacaaa gtacttttga caaaacattt ctatttggaa acttgttata gccccgtgac
     3961 atctttgggc acagattgtc atgatacaaa tggcaacctt gagacacaga tttctatggg
     4021 actctggatc tttctggaag ccaatatgga gccccctgtc acctgttaaa gggtatggca
     4081 gggttaggca gctctggtca agcatgactc aattttattt ctcttgctgg caccccagta
     4141 gcaaggacta aagcgacagg tccctctcag cactggcttg ctctataact aggcctgagg
     4201 tgctcagact gctccacagg tttaactctt tgactctaat aacccactga gatgaatttg
     4261 tatatgcccc aatgcttgta tatgctgaat agaatcagtg tctgtatttt atgggggtgg
     4321 gtgggattgg gaaatccatc tgcttctagt catcaccatc tgtaaagggg atatatatga
     4381 a
//
