LOCUS       XM_006232936            8937 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus GA binding protein transcription
            factor subunit beta 2 (Gabpb2), transcript variant X1, mRNA.
ACCESSION   XM_006232936
VERSION     XM_006232936.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006232936.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006232936.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8937
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8937
                     /gene="Gabpb2"
                     /note="GA binding protein transcription factor subunit
                     beta 2; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 29 ESTs, 1 long SRA read, 17
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 152 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:295263"
                     /db_xref="RGD:1565234"
     CDS             707..1948
                     /gene="Gabpb2"
                     /codon_start=1
                     /product="GA-binding protein subunit beta-2"
                     /protein_id="XP_006232998.1"
                     /db_xref="GeneID:295263"
                     /db_xref="RGD:1565234"
                     /translation="MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHL
                     AAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHAHIVELLVRSGADVNAKDM
                     LQMTALHWATEHRHRDVVELLIKYGADVHAFSKFDKSAFDIALEKNNTEILVMLQEAM
                     QNQVNTNPERANPVANPVAVTAPFIFTSGEVVNLASFVSSANNTKATSANLEEIEEGN
                     SLDSSIQQVVGSGGQRVITIVTDGVPLGNIQTAIPTGGIGQPFIVTMQDGQPVLTVPA
                     GQVAEETIIEEEEEDEEKLPLVKRPRMAEMTNSVEEMKEGSERELLQQQLQEANRRAQ
                     EYRHQLLKKEQEAEQYRLRLEAMARQQPNGVDFTVVEEVAEVDAVVVTEGEEVERATH
                     AMKSGRTTEPHTSVSIETVSS"
ORIGIN      
        1 atttttaaat ttttacttta tgtgcattgc tgttttgtct gaatgtaatg cttgtgggag
       61 ggtgtcagat tttggagtta cacagttgta aagctgttct gtgggtgctg ggaattgaat
      121 ctgggtctcc tggagtagtc agtgctctta aaccctgaac tatctttcca gtgccgtttc
      181 tccctggttt ctctcagttc tttcactggt taaaatggtg acgagaaacc aagatatact
      241 ggtaaattta gtggctaaaa agacttgcaa ttttgttcta tcctcttcta gtctctccaa
      301 aagttttggg tttttctctc tctcctgata aatatttagg acaccaggaa agtgtcgggt
      361 cagacaggag tgtataacca ggaatgtctc aaacagcttc atcgaggcgg aagcaagatt
      421 ctcccccaac cctaaagtta gccctgcgga gaacaagtga gatggtagag tgagcggcac
      481 cagtaaccta gtttccccac agcacgtgtt ggcgccaaaa ctaccatctc ggcccgtccc
      541 ctgccggaac tatgtctcac gtaagccacg taatcattga tcctgcgcct cgctaagtag
      601 tcccgttcag gatgccctcg gtatacgctt ttccagctca agaggttttc agtaagaaga
      661 aatcagactc agagctacct ggaaacttct gtctctatgc ataaagatgt ctctggtgga
      721 cttggggaag aggctgctag aagctgcaag gaaaggccaa gacgatgaag tgaggacact
      781 gatggcaaat ggggctccgt ttaccacaga ctggcttgga acctcaccac ttcaccttgc
      841 agcccagtat ggtcactatt ccacagcaga agtgctcctt cgagctggcg ttagcaggga
      901 tgcccggacc aaagtggaca ggaccccttt gcatatggct gcagctgatg gacatgctca
      961 cattgtggaa ctacttgtta ggagtggcgc ggatgtgaac gccaaagaca tgctacagat
     1021 gacagctctg cactgggcca cggagcaccg ccaccgagat gttgtcgagt tactcatcaa
     1081 atatggggct gatgtccatg ctttcagcaa atttgacaag tctgcctttg acatagcact
     1141 ggagaaaaac aatactgaga ttttggtcat gcttcaggaa gcaatgcaga atcaggtgaa
     1201 cactaacccc gagagagcca acccggtggc taaccctgtg gctgtgactg ctccgttcat
     1261 cttcacctct ggagaggtcg ttaacctcgc tagctttgtt tcttcagcca acaacaccaa
     1321 agcaacctca gctaatttag aagaaatcga agaaggaaat tctcttgact cctcaatcca
     1381 gcaagtggtg gggagtggag gccagagggt catcaccata gtgactgatg gagtccctct
     1441 tggtaacatc caaaccgcaa tccctactgg aggcattggc cagccgttta ttgtaactat
     1501 gcaagatggg cagccagttc taactgtgcc tgctggtcag gttgcagagg aaacgataat
     1561 tgaagaggaa gaagaggacg aggagaagtt gcctttggtg aagagaccga ggatggcaga
     1621 gatgacaaac agtgttgagg aaatgaagga aggcagtgaa agagagctac tgcagcaaca
     1681 gctccaggag gccaacagaa gagcccagga gtacagacac cagctcctca agaaggagca
     1741 ggaggcagag cagtaccggc tcaggctgga ggctatggct cggcagcagc ccaacggagt
     1801 ggatttcacc gtggttgagg aggtggctga agtggatgct gtagtggtga cagaagggga
     1861 agaggtagaa agagcaacac acgccatgaa gtcaggaagg accacggagc ctcacactag
     1921 tgtttccata gaaactgttt cctcctaaca gccacaactt gtgctcgtct tactcttttt
     1981 aagaagaaag tacagaggca agtgtcgcat acaaattcga atgtccttaa gaaggtaaca
     2041 gtagccaggc tcaaggcctg agccttggaa ggctgcatgt gcagttggaa aactcagcca
     2101 ttttaggagt atcggaggga ccaaaggacc aggaccaaat ctctccgctc atatcgttgc
     2161 tttaaacaga gtaatgggca ttgtgggttg attttttttt ttaatagtta gctttatatc
     2221 aaaagatttt aactcaatac ttgtaataca tatacaccaa gagcctttaa aaatttcaag
     2281 tgacctgaag atttgcctta gatttatgaa gctgacaagg ttgtaggaaa cctcctcttg
     2341 aggaagagta aaggctatca tacatttcta aaggagcagg cacacaagtt cttcctaatt
     2401 aatttactaa aatgaaatct ataagccagg catggcagta cacaccttcg atgtcagcac
     2461 tcaggaagct gcgacagaaa actttttgac atcagcctga gctgaaggga gtccttcagt
     2521 aaaagggcca gatgttgtgg tgagtgcctt tagttccagc actggggaaa tagacacggg
     2581 cggatctctg tgagttcaag gccatgtggt ctacatacca agttccaggc cagccaaggc
     2641 tacatacata gtgagacctg tgtcctaaaa agcagaacag gccggagtgg agaagtggtg
     2701 ggtttggagc tttgcttgct cttccagaga accttagctc catccctagc ccccggatca
     2761 agctgctcac aagtacatgg aactccagct cccagggatc atgttctttt ttgacatgtg
     2821 tggataacca cacatataca tttatatata catataaata aaaattttaa aaattaataa
     2881 caaaaaataa gttaaatgca gtcgttcaca ctttgggaac cagaaatagg aagattgcca
     2941 tgaatttgaa gtcagcctga gctccgtagt gagttacagg ccagcctggg ctactatgtg
     3001 ggaccttaat gcaagggaaa aacaagtgta gtggtgtgca cctctcattc ctccgcttgg
     3061 gaggcagagg caggaggatc tatgagtttg aggccagcct agtctacgag agagttctgg
     3121 tatagccagg gctacataca gagacacttc ttaacaaaga aggtttgatt tatgattgcc
     3181 cgataaattg tgtatctgta gcttagatac cagtataaaa agaaaaaaca aaattaagct
     3241 aggcataatg gtggatcttg taatccctgc acttgggagg gtgagacaga aaatcgctat
     3301 aacttgttag aggtagcttt ggcttcagta agatctttct caaaaagtaa caacagaaac
     3361 ccagaaatga ccagctgtgg tggcgatggg ctctcgtccc tgcacttggg gagcagaggc
     3421 atgcaggtcc ttgggattct aactagcttg gtccacgtgg tcagttccaa gccagcaggg
     3481 ttacccagac cctaacaagg aacagagaaa aaacaaaaac aagccctgag gaagtaactc
     3541 agaggtagaa catgctgctt agcctgcaag aagccctggg tgcgtccttt ggcaccgtac
     3601 gattacaagg agacaaggcc aggagagcaa aggaaaccat tgacaccaaa cctaaaaaca
     3661 ggagagaagc tgtgttgaca tggcagtgtg tgcgaagcca tgccttccag gctgtgtttc
     3721 cagagcacag gaggtggcca gacagagact tctgggctcc aagtctctgc tctagagatg
     3781 gaaactggat attggctgga ctttataaaa ccacaagcag gaggatcagt tttttaaaaa
     3841 atttaaatta atttttgttt gtcattgtaa caatatcttg cttccaaaca tctatttata
     3901 taaaatcaag ctcaaaactc tttaaagtgt atacaatttg gccaaatttt ctatatcaca
     3961 tgggacactg gtgctttctg tagcacttag catcctgtca aaaaggagtg tggcagacat
     4021 agggactgac cgggctgggg aggtttgtcc ctgtttgatt ttgtgtgagt gcattgctgc
     4081 ttctctcagt gtggccagta gagtctgtgc cctagagtgc tcaggtgaca aagggagtgg
     4141 gtgtcactgc cacagccagg agccagccac acacccaggc cctttgctga cctcccttct
     4201 ccctttgctc tgtatattcc ctctgctcag acacttttgc aaagattttc agtgctgggt
     4261 atttgagaaa gggttgggac gggtctctct agcatgaagt ggatgtatgt gtttgtatag
     4321 ctggacacta cttacgcttg ttagcagtca ggaactacag gaggaagatt gagttcaagg
     4381 ccagcttgaa ctacggtgtg tgagcctttc tcaaaaccac aaaaacaaga cagctgaaca
     4441 ttgagcctca tgcctataat cccaactcaa agggtcactg gtgtctcaag ctgagacttc
     4501 taggcaatac agtgagctct actctagggt agcatagacc acagagacta gagtccagga
     4561 ggagagccct tgtatatcat tctatgaggt cctagtccta gttcaatccc caggaatgca
     4621 aaaaaacaat gtttgaacat tttttttttt tggttctttt ttttttcgga gctggggacc
     4681 gaacccaggg ccttgtgctt cctaggcaag cgctctacca ctgagctaaa tccccagccc
     4741 cgtttgaaca ttttttttta aacagggtgt gatagtacat gtctatagtc ccagaactgg
     4801 gagaggaggc aagaggtcag aagttgaggg tcatccttgt gatttatcaa gtttgaggcc
     4861 tgtgtatacc ctgtctcccc aaagtgggag aggaatatga gcgcagagag ggctttggga
     4921 taggtaatgt agacttgctt cctttattgc aaattagaag aaaccagagg gacatgtgcc
     4981 aagtacacat ttgattgact gttgagaata tggtttccta attagtgatc atgaagaaaa
     5041 catgcatttt taacctggaa aagggttggc agttaacttg gttctgttta ccttgactag
     5101 tataataatt tgttgtagtg ttccagaggt atagaatcat ttctggctca aaatagactg
     5161 aaacataatt ctccaaatca catttagcag aattgactat taggagttta taggtaaaaa
     5221 taatcatttt aaaattaacc ttcactgctg gcactgtggc taggtctgct ccacagatct
     5281 gagcatcaga gattattcta gtgtgttgag agcattgtgt aagcacaggg aggagctgtg
     5341 tgtggttaag acggtggctt catctgctgt ggatccttct gtttgcaggg ctcttctgag
     5401 acaccctggg aatggggtac tagcaataag ctgtcgtggg tggcatttca gagccttggt
     5461 aactagagag agtaagtttc ttcatagatg gcttttgttt acattcctag agcatatgtt
     5521 gactttaatt cccttccttc tttaaaggaa tagatattaa ctctgcagag gagagctaca
     5581 cctgaccacc tcgttctctt gagtagtgcc tgtggggatg ggagtctgtc cattgagtcc
     5641 tcccttctga gcagagcttc tttctatctt tagggagggc tggttccgtt gttccaagtc
     5701 acttttgaac atgaggtctc tgagatagaa aagaagagat ggacaatgtc ttaaagaggt
     5761 tgacaggaaa aaaggttctc ttttatttac tttttttttt tttttttttc cggagctggg
     5821 gaccgaaccc agggccttgc gctcgctagg caagcgttct accgctgagc taaatcccca
     5881 acccctttta tttacttttt aatagacatc tatcatctca aaaaggaagt aggctttgct
     5941 ttttgattac actgctctga gtgggagagg gtatggaaga gagtgattcc agttagttag
     6001 aagtattgaa tagtcaaaca tagggcaaca tgtgtgaaat cccagcacac tgggaagaag
     6061 gtcaaagcaa gaggatccag ggttagaggc catcctgggc tacatgaaga cagtgtctca
     6121 gaaacaaaag atggggctgc agaaatggct tggtggataa gaacacttgc tatatgcaaa
     6181 tttgaagacc caaattcaga tccgagtacc cacgctaaca aaccaggcat ggtttctggc
     6241 acacctgtaa cccccagtcc tctagaaaga tgaggcagga gggtcactag gcctggctag
     6301 ctgccagcct tgcccaaaag gtgagtctca ggttcagaga aagactgtct caagtggata
     6361 ggcagagagt aatggaggag gatacccaac atcattccct tctaccctct gcccatagat
     6421 acatgagcct ggacacacac acacacacac acacacacac acacacacac acacacgtgc
     6481 acatactcca cactcacata tatatatata cagcacatac aaacacacaa gtagaaatta
     6541 aatatcaaat acattaatta ctatttcatg acttcacata accggggcgc cactctgtat
     6601 cccaagctgg cctcagactc agggcagtcc tcctgtctca gcctcttgag tgctaggact
     6661 gtaggcatcc tcatctggtt tggttgacct tagatcttct gagttaagac atctcagcgg
     6721 attagtggag ctggattagt gagaatcgag tagcaggtga ggtgttcaga gctggggctc
     6781 gagcagggac aacaccaggc ttaggactcc agtaaagctg ctacagggac accagtgtta
     6841 attcagggct gtagattaat gcagttaatt gtagacccta catttgcatc ttggttgtaa
     6901 gtctttcacc ccagtagaga aaaaaatgtt acaacttctg tttttcctgg cttcaggaaa
     6961 ttcatgacag atatataatg tgcctttcct ccatgttcct gcctctgggc agtgccagag
     7021 cagagccctc atggctgaca taggagaaaa cagctttatg gagtttttgc tctgaactct
     7081 gtgccttaaa agatattttt ctgtcagatg tatatttact ttattttgtt ttgtttccag
     7141 tcttactatg tagctctggc tgcctagaac ttgctgtgta gaccaggctg gctcaaatgt
     7201 atagagaacc ccctgcttct gccgtcccct cctgagtgct gggattaaag gcaccctatc
     7261 cctttgctgg gtgcatctca gtgtatttgt atgtaagtac ataatggatc ttccagtttt
     7321 ctctttgagg ttaagctcta aattatctgg gataacctgg aagcttacta agttacatag
     7381 aaagggtttc tttgaattcc cttaatccaa agggaggtac atggaatgct gggagggttg
     7441 ggggaggggg agcactgagt aaggatcact gtgggagttg aggcccaggg agatggtcca
     7501 tgctcagggg aaagcaagca aatacaaaga caccatgcag tgcacagtga cagggatcaa
     7561 agtgagcttc ccctccatgg ctggttgcct tttatgcctg ttgaagcttc cttgacactt
     7621 caaaaacccc tcagagccag gcatgggtac acctttaata tcatggctct ctgagttcca
     7681 ggccagctag ggctatacag tgagacctgt ctcaatgaga aatgaaaagc cctctagctt
     7741 ccaggcagga aaacccagat gaggggctgc aaacggacag acaccctggg ttctgcattc
     7801 ccagctcagg atctcatgtt gagagataac tcactctgag aatggtgaag cggtcattgc
     7861 ctaacatccg ccacttctaa tgctgtaaca gccgaggcag gtggtgaact cttgtcagaa
     7921 gttgaagagt gagcaggagt cacttttttg tcccagttta ttggagacta gcttgctgtt
     7981 ctctactcga gcagatgaat ttacgccaag actcccagca cgcactttat gctcttacct
     8041 ctgttttgtg ttttgttttc tttccttgaa ttggggtctc acactagccc aggactccca
     8101 gcaatccttg tgccttaatc tcccatgtac taagattaca gactgagcca ccatgccaga
     8161 ccggctctag ctccatttac catggtgcct ctacactttt cagactttgt actccatttt
     8221 ctgttacttt acttaccagg agaccaaaag caagaaggat gtgaattaga attaaatagc
     8281 tttgagcctc tggtgctgcc cttttaaaca ttttaacctc tctagggtta gggggaggaa
     8341 gataattcct aaactctata caagtaatta ggtgtgttaa tagcaggaaa ttgtgatcct
     8401 ctctactccc caccctacta ctgtttctgc tgtcccacgg ctcttgtctt tggaaggttt
     8461 tgccaggcac tggaacctaa ttagtcggtc atctctaatc tgtgggactc acctttcctt
     8521 tctctcctcc ttcccaacca catactttgt tctgaggtga tttgtttctg agaactaact
     8581 aggttacccc tctgttccca cgtagtttct ggcgtctcgc tatgtcaact gttacagtag
     8641 caactgtgct cgctggcctg gcccagtgtg tgctctgcca aggccatgga gaggagggtg
     8701 ccccggggtt cttctcagtg ttgccttggt tttcaagttg tccggcagct ttatgtatag
     8761 taaactttca ggaaaacaaa agtttctttt ttatttagga taaacagttt gattctgatg
     8821 cacaagcttc cgtgtatatg tgtgtggatg agcatctctg tatgtatacc tatatagatc
     8881 tatattatat atacaatttt gtactatcgt ttaaaataaa gacatttctt aataaaa
//
