LOCUS       NM_001398923            2700 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus GA binding protein transcription factor subunit
            beta 1 (Gabpb1), transcript variant 2, mRNA.
ACCESSION   NM_001398923 XM_039105688
VERSION     NM_001398923.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2700)
  AUTHORS   Ryu,D., Jo,Y.S., Lo Sasso,G., Stein,S., Zhang,H., Perino,A.,
            Lee,J.U., Zeviani,M., Romand,R., Hottiger,M.O., Schoonjans,K. and
            Auwerx,J.
  TITLE     A SIRT7-dependent acetylation switch of GABPbeta1 controls
            mitochondrial function
  JOURNAL   Cell Metab 20 (5), 856-869 (2014)
   PUBMED   25200183
REFERENCE   2  (bases 1 to 2700)
  AUTHORS   Du,K., Leu,J.I., Peng,Y. and Taub,R.
  TITLE     Transcriptional up-regulation of the delayed early gene HRS/SRp40
            during liver regeneration. Interactions among YY1, GA-binding
            proteins, and mitogenic signals
  JOURNAL   J Biol Chem 273 (52), 35208-35215 (1998)
   PUBMED   9857059
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Dec 28, 2021 this sequence version replaced XM_039105688.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.2577859.1,
                                           SRR22582424.1407730.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840107,
                                           SAMN12840108 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-237               JAXUCZ010000003.1  134376894-134377130 c
            238-345             JAXUCZ010000003.1  134361237-134361344 c
            346-513             JAXUCZ010000003.1  134358381-134358548 c
            514-708             JAXUCZ010000003.1  134357142-134357336 c
            709-820             JAXUCZ010000003.1  134355469-134355580 c
            821-934             JAXUCZ010000003.1  134355036-134355149 c
            935-1120            JAXUCZ010000003.1  134351367-134351552 c
            1121-1236           JAXUCZ010000003.1  134344223-134344338 c
            1237-2700           JAXUCZ010000003.1  134333339-134334802 c
FEATURES             Location/Qualifiers
     source          1..2700
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..2700
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /note="GA binding protein transcription factor subunit
                     beta 1"
                     /db_xref="GeneID:499883"
                     /db_xref="RGD:1560391"
     exon            1..237
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
     CDS             238..1389
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /EC_number="3.2.1.3"
                     /note="isoform 2 is encoded by transcript variant 2; GA
                     repeat binding protein, beta 1; GA-binding protein subunit
                     beta-1; GA binding protein transcription factor, beta
                     subunit 1"
                     /codon_start=1
                     /product="GA-binding protein subunit beta-1 isoform 2"
                     /protein_id="NP_001385852.1"
                     /db_xref="GeneID:499883"
                     /db_xref="RGD:1560391"
                     /translation="MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHL
                     AAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDM
                     LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAM
                     QNQINTNPESPDTVTIHAATPQFIIGPGGVVNLTDETGVSAVQFGNSSTSVLATLAAL
                     AEASAPLSNSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSI
                     PTSGMGQPIIVTMPDGQQVLTVPATDIAEETVISEEPPAKRQCMEIIENRVESAEIEE
                     REALQKQLDEANREAQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV"
     exon            238..345
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
     exon            346..513
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
     exon            514..708
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
     exon            709..820
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
     exon            821..934
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
     exon            935..1120
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1236
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
     exon            1237..2700
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgaggccg ccgcaggcat gctgggagct cgcccgccgt gtccctccgc gccgacgggg
       61 acttttcggt ggggattttg ggcgccgacc agacgcggca ttttcggaaa atagcgccct
      121 gtgcagcgaa gcgctctgtg tgtggcgggg ccgcgtcagc cctgccggct ccgaggcgcc
      181 gcggtccccg cacctcctcc cgctgctccc ccgccgccgc tcccgaagct tttccagatg
      241 tccctggtag atttggggaa gaagcttttg gaagcggcac gggcaggcca agatgacgaa
      301 gtccgtattt tgatggcaaa tggagctcct tttaccacag actggctggg aacttctcca
      361 cttcatctgg ccgcacagta tgggcattac tctaccacag aggtgcttct ccgagccggt
      421 gtaagtagag atgccaggac caaagtggac cggacaccac tgcacatggc agcttctgag
      481 ggccatgcca gtatagtaga ggttttgctt aagcatggtg ctgacgtcaa tgcaaaggat
      541 atgttaaaga tgacagctct gcattgggcg acagaacata atcatcaaga ggtggtggag
      601 cttttaatca aatatggtgc tgatgtacac acgcagagta aattttgtaa aactgcattt
      661 gatatttcaa tagacaatgg aaatgaagat ttagcagaga tattacagat tgctatgcag
      721 aaccaaatca acaccaaccc ggagagccct gacactgtga caatacatgc tgccacgccg
      781 cagttcatca ttggacccgg aggggtggtg aaccttacag atgaaacagg agtatctgct
      841 gttcagtttg gaaactcctc tacgtcagta ttagctacat tagctgcctt agcggaagca
      901 tctgccccat tgtccaattc ttcagagact ccagtagtgg ccacagagga agtggttacc
      961 gcagaatctg tggatggtgc aattcagcaa gtagttagct cagggggtca gcaagtcatc
     1021 acgatagtca cagatggaat ccagctggga aacctgcact ccattccaac cagtgggatg
     1081 ggtcagccca tcattgtgac catgcccgat ggacagcaag tattgacagt gccagccaca
     1141 gacattgctg aagaaactgt catcagtgaa gagccaccag ctaagagaca gtgtatggaa
     1201 ataattgaga accgggtgga atctgcagag attgaagaga gagaagcgct tcagaaacag
     1261 ctggatgaag ccaaccgaga ggcccagaag taccgacagc agctgcttaa gaaggagcag
     1321 gaggcagagg cctacaggca gaagctggag gccatgacac gcctccagac caacaaagaa
     1381 gccgtttagt ctccgtgaac acctgtttgc ttttaccttt tgtccagaaa gaatgcagtc
     1441 ttgaactgta cacagtaagg acacagcctt gggagtacga aatgataaag agtactaccg
     1501 attgataatg ggacttaagc catgagctct cagttcttgt aatataaaac ttcagaactt
     1561 gtgaaatgta tttaaaactg aattctgtaa atagtttttt tggttgtttc tttttttaca
     1621 gttataaatg agttgataaa gattgttgca gagatccaaa aaccacagta tgccactgtt
     1681 atggggaatt ctttttgatt tgggtacaga ctcaacttct cagaaacaga agttttaagc
     1741 gtgatcgttg tcgattagac caaatgtgtg acaattatgg tgactgatgc tggaaagact
     1801 ctgcagagag atttctccca ggaactttgt acagctttta ggttgtctca ggttctctga
     1861 agacattttt tagggagcag aaattttata tttgttcaat ttcagctaca cgcaagtata
     1921 caagatttac atgtatatga agccaatatt tttaaaattt tgtttgtaca tagtctgcat
     1981 gttttatgat attaaaacac atcacttgct taggtatgtt tcccacaaag acgatgaaag
     2041 ttaccaagaa aaacaaaggc accgctgtca ttttgtcggt cattgaaagt gagtaagctc
     2101 gcgactggtt ttactggcga ccatgacgat gttcttggag cagcttgcaa gaaaactcaa
     2161 tctgcacttg tattgctttt ctggcaattg cagtgtgagg acgtgagact gctctgtgcc
     2221 ttccttccat catgacttcc acacaagcac tttgaggcgc tggatcttaa gataatgttt
     2281 ttagcaaact cagtgcattt gggtttctga aatatttcat ggacttactc ccctccccct
     2341 aagaaattat tcttatggaa aattgctttt gtatgtagag caggaccttt tgtactcggt
     2401 gatgctatgg gtatgtataa cataactttc gctgttccct gtgaacgctc cgggcttgtg
     2461 ctgcgactca caatattgtc agttccgaaa tgtatggaca tttgacagac tattccactc
     2521 tcttttgtaa aatgtaactt tgaactcttt attattttgt tttgttttat tgctttttgg
     2581 aaatgtttac ccccacccaa cccccaggct cttctagctt ctctgtataa agaaccagtt
     2641 accctcgaga ctgtactctg gcctcatttt ctattttaca attaaataac tttccacata
//
