LOCUS       NM_001039036            2584 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus GA binding protein transcription factor subunit
            beta 1 (Gabpb1), transcript variant 1, mRNA.
ACCESSION   NM_001039036 XM_575228
VERSION     NM_001039036.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2584)
  AUTHORS   Ryu,D., Jo,Y.S., Lo Sasso,G., Stein,S., Zhang,H., Perino,A.,
            Lee,J.U., Zeviani,M., Romand,R., Hottiger,M.O., Schoonjans,K. and
            Auwerx,J.
  TITLE     A SIRT7-dependent acetylation switch of GABPbeta1 controls
            mitochondrial function
  JOURNAL   Cell Metab 20 (5), 856-869 (2014)
   PUBMED   25200183
REFERENCE   2  (bases 1 to 2584)
  AUTHORS   Du,K., Leu,J.I., Peng,Y. and Taub,R.
  TITLE     Transcriptional up-regulation of the delayed early gene HRS/SRp40
            during liver regeneration. Interactions among YY1, GA-binding
            proteins, and mitogenic signals
  JOURNAL   J Biol Chem 273 (52), 35208-35215 (1998)
   PUBMED   9857059
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Dec 28, 2021 this sequence version replaced NM_001039036.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098859.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760389,
                                           SAMN06621351 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-237               JAXUCZ010000003.1  134376894-134377130 c
            238-345             JAXUCZ010000003.1  134361237-134361344 c
            346-513             JAXUCZ010000003.1  134358381-134358548 c
            514-708             JAXUCZ010000003.1  134357142-134357336 c
            709-820             JAXUCZ010000003.1  134355469-134355580 c
            821-934             JAXUCZ010000003.1  134355036-134355149 c
            935-1120            JAXUCZ010000003.1  134351367-134351552 c
            1121-2584           JAXUCZ010000003.1  134333339-134334802 c
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..2584
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /note="GA binding protein transcription factor subunit
                     beta 1"
                     /db_xref="GeneID:499883"
                     /db_xref="RGD:1560391"
     exon            1..237
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
     CDS             238..1152
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /EC_number="3.2.1.3"
                     /note="isoform 1 is encoded by transcript variant 1; GA
                     repeat binding protein, beta 1; GA-binding protein subunit
                     beta-1; GA binding protein transcription factor, beta
                     subunit 1"
                     /codon_start=1
                     /product="GA-binding protein subunit beta-1 isoform 1"
                     /protein_id="NP_001034125.1"
                     /db_xref="GeneID:499883"
                     /db_xref="RGD:1560391"
                     /translation="MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHL
                     AAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDM
                     LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAM
                     QNQINTNPESPDTVTIHAATPQFIIGPGGVVNLTDETGVSAVQFGNSSTSVLATLAAL
                     AEASAPLSNSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSI
                     PTSGMGQPIIVTMPDGQQGERSASETAG"
     exon            238..345
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
     exon            346..513
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
     exon            514..708
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
     exon            709..820
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
     exon            821..934
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
     exon            935..1120
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..2584
                     /gene="Gabpb1"
                     /gene_synonym="RGD1560391"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgaggccg ccgcaggcat gctgggagct cgcccgccgt gtccctccgc gccgacgggg
       61 acttttcggt ggggattttg ggcgccgacc agacgcggca ttttcggaaa atagcgccct
      121 gtgcagcgaa gcgctctgtg tgtggcgggg ccgcgtcagc cctgccggct ccgaggcgcc
      181 gcggtccccg cacctcctcc cgctgctccc ccgccgccgc tcccgaagct tttccagatg
      241 tccctggtag atttggggaa gaagcttttg gaagcggcac gggcaggcca agatgacgaa
      301 gtccgtattt tgatggcaaa tggagctcct tttaccacag actggctggg aacttctcca
      361 cttcatctgg ccgcacagta tgggcattac tctaccacag aggtgcttct ccgagccggt
      421 gtaagtagag atgccaggac caaagtggac cggacaccac tgcacatggc agcttctgag
      481 ggccatgcca gtatagtaga ggttttgctt aagcatggtg ctgacgtcaa tgcaaaggat
      541 atgttaaaga tgacagctct gcattgggcg acagaacata atcatcaaga ggtggtggag
      601 cttttaatca aatatggtgc tgatgtacac acgcagagta aattttgtaa aactgcattt
      661 gatatttcaa tagacaatgg aaatgaagat ttagcagaga tattacagat tgctatgcag
      721 aaccaaatca acaccaaccc ggagagccct gacactgtga caatacatgc tgccacgccg
      781 cagttcatca ttggacccgg aggggtggtg aaccttacag atgaaacagg agtatctgct
      841 gttcagtttg gaaactcctc tacgtcagta ttagctacat tagctgcctt agcggaagca
      901 tctgccccat tgtccaattc ttcagagact ccagtagtgg ccacagagga agtggttacc
      961 gcagaatctg tggatggtgc aattcagcaa gtagttagct cagggggtca gcaagtcatc
     1021 acgatagtca cagatggaat ccagctggga aacctgcact ccattccaac cagtgggatg
     1081 ggtcagccca tcattgtgac catgcccgat ggacagcaag gagagagaag cgcttcagaa
     1141 acagctggat gaagccaacc gagaggccca gaagtaccga cagcagctgc ttaagaagga
     1201 gcaggaggca gaggcctaca ggcagaagct ggaggccatg acacgcctcc agaccaacaa
     1261 agaagccgtt tagtctccgt gaacacctgt ttgcttttac cttttgtcca gaaagaatgc
     1321 agtcttgaac tgtacacagt aaggacacag ccttgggagt acgaaatgat aaagagtact
     1381 accgattgat aatgggactt aagccatgag ctctcagttc ttgtaatata aaacttcaga
     1441 acttgtgaaa tgtatttaaa actgaattct gtaaatagtt tttttggttg tttctttttt
     1501 tacagttata aatgagttga taaagattgt tgcagagatc caaaaaccac agtatgccac
     1561 tgttatgggg aattcttttt gatttgggta cagactcaac ttctcagaaa cagaagtttt
     1621 aagcgtgatc gttgtcgatt agaccaaatg tgtgacaatt atggtgactg atgctggaaa
     1681 gactctgcag agagatttct cccaggaact ttgtacagct tttaggttgt ctcaggttct
     1741 ctgaagacat tttttaggga gcagaaattt tatatttgtt caatttcagc tacacgcaag
     1801 tatacaagat ttacatgtat atgaagccaa tatttttaaa attttgtttg tacatagtct
     1861 gcatgtttta tgatattaaa acacatcact tgcttaggta tgtttcccac aaagacgatg
     1921 aaagttacca agaaaaacaa aggcaccgct gtcattttgt cggtcattga aagtgagtaa
     1981 gctcgcgact ggttttactg gcgaccatga cgatgttctt ggagcagctt gcaagaaaac
     2041 tcaatctgca cttgtattgc ttttctggca attgcagtgt gaggacgtga gactgctctg
     2101 tgccttcctt ccatcatgac ttccacacaa gcactttgag gcgctggatc ttaagataat
     2161 gtttttagca aactcagtgc atttgggttt ctgaaatatt tcatggactt actcccctcc
     2221 ccctaagaaa ttattcttat ggaaaattgc ttttgtatgt agagcaggac cttttgtact
     2281 cggtgatgct atgggtatgt ataacataac tttcgctgtt ccctgtgaac gctccgggct
     2341 tgtgctgcga ctcacaatat tgtcagttcc gaaatgtatg gacatttgac agactattcc
     2401 actctctttt gtaaaatgta actttgaact ctttattatt ttgttttgtt ttattgcttt
     2461 ttggaaatgt ttacccccac ccaaccccca ggctcttcta gcttctctgt ataaagaacc
     2521 agttaccctc gagactgtac tctggcctca ttttctattt tacaattaaa taactttcca
     2581 cata
//
